Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h02
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   5.8  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   5.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -3

Query: 366 HHGVPRI---TSPYDISGPLQV 310
           HH  PR    T+P+DI+ PL V
Sbjct: 742 HHQPPRNPVGTNPHDINNPLSV 763


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -3

Query: 366 HHGVPRI---TSPYDISGPLQV 310
           HH  PR    T+P+DI+ PL V
Sbjct: 634 HHQPPRNPVGTNPHDINNPLSV 655


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +3

Query: 15  NRLWGENFFNPQTKKWSKQKDDDNKRS 95
           N  W  N  N     W K   +DN+ +
Sbjct: 373 NNRWHNNNGNNSNNHWRKNNPNDNRNN 399


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 419 VREQDGADLRQGSFLRLWTRF 481
           +++Q G    +G F++LW  F
Sbjct: 382 MQDQKGWGRSEGDFIKLWDMF 402


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 337 WRCYTRDPMMMKLPLVSRAVILK 405
           ++ Y +DP+ +   LVS  ++LK
Sbjct: 71  FKAYIKDPLTLAQGLVSTEMLLK 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,394
Number of Sequences: 336
Number of extensions: 4354
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)