Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8h02
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 346 2e-96
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 346 2e-96
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 126 2e-30
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 80 4e-16
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.2
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc... 27 2.0
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 2.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 4.7
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 26 4.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.2
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 26 6.2
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 26 6.2
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces... 25 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 346 bits (851), Expect = 2e-96
Identities = 158/242 (65%), Positives = 197/242 (81%), Gaps = 4/242 (1%)
Frame = +3
Query: 6 KLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFKKEEIDD 173
K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M +K+E+
Sbjct: 239 KMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFT 298
Query: 174 LLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYE 353
LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR E LYE
Sbjct: 299 LLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYE 358
Query: 354 GPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNF 533
GP DDE A+GI++CD APLM+YVSKMVPTSD+GRFYAFGRVFSG V +G K RI GPN+
Sbjct: 359 GPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYAFGRVFSGTVRSGLKVRIQGPNY 418
Query: 534 TPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNM 713
PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT+TT + AHNM
Sbjct: 419 VPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTTSEVAHNM 478
Query: 714 KV 719
KV
Sbjct: 479 KV 480
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 346 bits (851), Expect = 2e-96
Identities = 158/242 (65%), Positives = 197/242 (81%), Gaps = 4/242 (1%)
Frame = +3
Query: 6 KLMNRLWGENFFNPQTKKWSKQKDD----DNKRSFCMYVLDPIYKVFDAIMKFKKEEIDD 173
K+M RLWGEN+FNP+TKKWSK D N+R+F M++LDPIY++FDA+M +K+E+
Sbjct: 239 KMMQRLWGENYFNPKTKKWSKSATDANGNSNQRAFNMFILDPIYRIFDAVMNSRKDEVFT 298
Query: 174 LLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYE 353
LL K+ VTIK ++ + +GKALLKVVMR +LPA +AL++MI +HLPSP AQ+YR E LYE
Sbjct: 299 LLSKLEVTIKPDEKELEGKALLKVVMRKFLPAADALMEMIVLHLPSPKTAQQYRAETLYE 358
Query: 354 GPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNF 533
GP DDE A+GI++CD APLM+YVSKMVPTSD+GRFYAFGRVFSG V +G K RI GPN+
Sbjct: 359 GPMDDECAVGIRNCDANAPLMIYVSKMVPTSDRGRFYAFGRVFSGTVRSGLKVRIQGPNY 418
Query: 534 TPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNM 713
PGKK+DL+ K IQRT+LMMG +E IED P+GNI GLVGVDQFLVK+GT+TT + AHNM
Sbjct: 419 VPGKKDDLFIKAIQRTVLMMGSRIEPIEDCPAGNIIGLVGVDQFLVKSGTLTTSEVAHNM 478
Query: 714 KV 719
KV
Sbjct: 479 KV 480
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 126 bits (305), Expect = 2e-30
Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 3/228 (1%)
Frame = +3
Query: 18 RLWGENFFNPQTKKWSKQK-DDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGV 194
RLWG+ +F+ +T+K++KQ D RSF ++L+P+YK+ + + E++ L +
Sbjct: 353 RLWGDIYFDSKTRKFAKQSLDGSGVRSFVHFILEPLYKLHTLTISDEAEKLKKHLSSFQI 412
Query: 195 TIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHDDEA 374
+K +D D K LL+++ S+ + + H+PSP + Y GP +
Sbjct: 413 YLKPKDYLLDPKPLLQLICASFFGFPVGFVNAVTRHIPSPRENAARKASQSYIGPINSSI 472
Query: 375 AIGI--KSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKK 548
I S + APL+M+V+K+ T D FYAF RV+SG+V GQK +++G N++ +
Sbjct: 473 GKAILEMSREESAPLVMHVTKLYNTVDANNFYAFARVYSGQVKKGQKVKVLGENYSLEDE 532
Query: 549 EDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITT 692
ED+ I + RY ++ +G + L GVD + KT TI +
Sbjct: 533 EDMVVAHIAEICVPCARYRLHVDGAVAGMLVLLGGVDNSISKTATIVS 580
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 79.8 bits (188), Expect = 4e-16
Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 12/156 (7%)
Frame = +3
Query: 21 LWGENFFNPQTKKWSKQKDDDNKR---SFCMYVLDPIYKVFD-AIMKFKKEEIDDLLKKI 188
LWG+ + +P+TK+ + K +R F +VL+ ++ V++ A+ E I+ ++K +
Sbjct: 252 LWGDYYLDPKTKRVLQPKHLQGRRLKPMFVQFVLENLWAVYESAVSNRNLENIEKIIKAL 311
Query: 189 GVTIKHED-SDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYR-MEMLYEGPH 362
+ + D KD + LL + + WLP A+L +PSP+ AQ R ++L PH
Sbjct: 312 NIKVLPRDIKSKDPRNLLLAIFQQWLPLSTAILLTAIREIPSPINAQANRARKVLSSTPH 371
Query: 363 ----DDEAAIGIKSCD--PEAPLMMYVSKMVPTSDK 452
D + + ++SCD E P+++Y+SKMV S++
Sbjct: 372 YEMIDPDITLAMESCDASKEQPVLVYISKMVAFSER 407
Score = 58.4 bits (135), Expect = 1e-09
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 447 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEK-TIQRTILMMGRYVEAIEDV 623
DK F R++SG + GQ+ + GP + P E K T++ LMMG+ + +E V
Sbjct: 464 DKDILIGFARIYSGTISVGQEVYVYGPKYDPVNPEKHITKVTVESLYLMMGQELVYLETV 523
Query: 624 PSGNICGLVGVDQFLVKTGTITTFKNAHNM 713
P+GN+ + G+ +++T T+ + N N+
Sbjct: 524 PAGNVFAIGGLAGTVLRTATLCSSPNGPNL 553
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 3 VKLMNRLWGENFFNPQTKKWSKQKDD 80
++L+NRL ++F +P+T KW K D
Sbjct: 639 LRLVNRLDVDSFLHPKTPKWVFNKQD 664
>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 194 DSNLLKEIINLLFLKFH-DGIEHLVDRIQNV 105
D N+L+ +NL LKFH IE ++D +V
Sbjct: 3 DENILRNAVNLQVLKFHYPEIESIIDIASHV 33
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 30 ENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTIK-- 203
+++ + K +K+K NK++ +LDPI ++ EI L K +G+ K
Sbjct: 72 DDYLDAHRKSSTKKKSSQNKQAKESKLLDPIAFQHKIALEEDDREIAHLEKMLGIKSKDK 131
Query: 204 --HEDSDKDGKALLK 242
H DK+ LL+
Sbjct: 132 SAHSKIDKEFGWLLE 146
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = -2
Query: 226 PSLSESSCLIVTPIFLRRSSISSFLNFMMASNTL*IGSKTYMQNERLLSSSFCFDHFFV* 47
P +S S C+ +F+ S S +F+M S L + S+ Y + + S+C + +
Sbjct: 417 PFISSSLCISPRYMFVVNSETVSVGSFLMVSEQLQMLSERYGFFDSIKFGSYCVSNLSIF 476
Query: 46 G---LKKFSPHNLFISL 5
L+K S NL ++L
Sbjct: 477 PKLLLEKTSVINLIMAL 493
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 351 EGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSD 449
+G H EA +K CDPE L + SK T++
Sbjct: 193 DGTHLAEA---LKKCDPETTLFLIASKTFTTAE 222
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 417 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 596
+YV VP D RFY + ++ + T + + +F P +D EK + L G
Sbjct: 2356 IYVWTNVPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFLP---KDSLEKFSELQNLSTG 2412
Query: 597 RYVEAIED 620
+++AI D
Sbjct: 2413 LHMQAIWD 2420
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 522 GPNFTP-GKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVG 653
G +F P GK ++ + Q + + RY+ DVP+G+I G+ G
Sbjct: 115 GSDFDPKGKSDNEIRRFSQAFMRQLFRYIGPQTDVPAGDI-GVTG 158
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 123 YKVFDAIMKFKKEEIDDLLKKIGVTIKHE---DSDKDGKALLKVVMR 254
Y+V + + F+K+ +D ++K + E +S K G+ ++ VV R
Sbjct: 350 YEVIEISIPFQKDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKR 396
>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 185 LLKEIINLLFLKFHDGIEHLVDRIQNVHAK 96
LL+ I ++FL H G+ H+ I+N K
Sbjct: 133 LLEPNIGMIFLYTHSGMTHITPSIRNDSTK 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,158
Number of Sequences: 5004
Number of extensions: 70387
Number of successful extensions: 232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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