Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8h02
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   341   3e-94
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              64   1e-10
SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   5e-08
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)             30   1.6  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_41193| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  341 bits (839), Expect = 3e-94
 Identities = 160/238 (67%), Positives = 189/238 (79%)
 Frame = +3

Query: 6   KLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKK 185
           KLM RLWG+ F N + KKW K++   N R F  +VLDPI+K+FDAIM FKKE   +LL+K
Sbjct: 242 KLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIFKMFDAIMNFKKEATANLLEK 301

Query: 186 IGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEMLYEGPHD 365
           + + +  E+ + +GK L K VMR WLPAGEA+LQMIAIHLPSPVV+QKYR E+LYEGP D
Sbjct: 302 LKIKLTVEERELEGKPLFKTVMRKWLPAGEAMLQMIAIHLPSPVVSQKYRCELLYEGPQD 361

Query: 366 DEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGK 545
           D  A+GIK+CDPE         MVPTSDKGRFYAFGRVFSGKV +GQK RIMGP++ PGK
Sbjct: 362 DAVALGIKACDPE---------MVPTSDKGRFYAFGRVFSGKVASGQKVRIMGPHYVPGK 412

Query: 546 KEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTITTFKNAHNMKV 719
           KEDLY KTIQRTILMMGRY+E I DVP GNI GLVGVDQFLVKTGTI+T+++ HNMK+
Sbjct: 413 KEDLYLKTIQRTILMMGRYIEPIVDVPCGNIVGLVGVDQFLVKTGTISTYEHCHNMKM 470


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 46/119 (38%), Positives = 68/119 (57%)
 Frame = +3

Query: 333 RMEMLYEGPHDDEAAIGIKSCDPEAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKA 512
           ++E  Y GP D +    + +CDP+  LM++ +K  P+ D   F+ FGRV SG +  GQ+ 
Sbjct: 316 QVEHNYTGPLDSDIVDAMNNCDPDGVLMVHTTKQYPSQDATAFHVFGRVMSGTLYAGQQV 375

Query: 513 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAIEDVPSGNICGLVGVDQFLVKTGTIT 689
           RI+G N+T   +ED     + R  +   RY   +  VP+GN   + GVDQ +VKT TIT
Sbjct: 376 RILGENYTMEDEEDSRVGIVGRLWIAEARYNIEVNRVPAGNWVLIEGVDQPIVKTATIT 434



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = +3

Query: 18  RLWGENFFNPQTKKWSKQKD-DDNKRSFCMYVLDPIYKVFDAI 143
           RLWG+ +F+ +T+K++++     ++RSF  ++L+P+YK+F  +
Sbjct: 275 RLWGDMYFSSKTRKFTRKAPLSTSQRSFVEFILEPMYKIFGQV 317


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
 Frame = +3

Query: 9   LMNRLWGENFFNPQTKKWSKQKDDDNKRS-FCMYVLDPIYKVFDAIM----KFKKEEIDD 173
           L   LWG+ + + +TK+  K+    NK+  F  ++LD I+ ++DA++    K K E+I +
Sbjct: 253 LQKTLWGDFYLDSKTKRIFKKAQLKNKKPLFVQFILDNIWALYDAVVIRRDKVKSEQISN 312

Query: 174 LLKKIGVTIKHEDSDKDGKALLKVVMRSWLPAGEALLQMIAIHLPSPVVAQKYRMEML 347
            LK + ++++   S  D +  L  +   WLP   ALL M+   LPSP+     R++ L
Sbjct: 313 SLK-LKISVRDSRSS-DRRVYLHAICSQWLPLSSALLSMVVDKLPSPLEIPGERVDKL 368



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 447 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 539
           +K  F AF RV+SG +  GQ+  I+GP   P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528


>SB_19388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +3

Query: 6   KLMNRLWGENFFNPQTKKWSKQKDDDNKRSFCMYVLDPIYK 128
           KLM RLWG+ F N + KKW K++   N R F  +VLDPI+K
Sbjct: 69  KLMKRLWGDQFINAEDKKWKKEQATGNVRGFNQFVLDPIFK 109


>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
          Length = 263

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 475 AFSLARLLPDKKLASWDQTLHLERKRTCMRRLSSV 579
           A S++RL P  + A W QT+H  R R+   R+ SV
Sbjct: 182 AQSVSRLPPIYRRAEWAQTVHRARSRSIPARVESV 216


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -3

Query: 465 RRNDPCRRSAPSCSRTSSVGLQDHSS*YQWQLHHHGVPRITSPYDISGPLQVMVNEWQSS 286
           +R  P     P C R S  GL   +     +L HH +       DI G L++M N+W + 
Sbjct: 187 QRIGPLTTGGPVCWRVSVWGLSPQTIRRSAELPHHVIQTCIILNDIDGLLEIM-NKWLNG 245

Query: 285 E 283
           +
Sbjct: 246 D 246


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 324 QKYRMEMLYEGPHDDEAAI 380
           +++++   YEGPHDDEA +
Sbjct: 548 ERHKINFKYEGPHDDEAIV 566


>SB_41193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 258 WLPAGEALLQMIAIHLPSPVVAQKYRMEML 347
           WLP   ALL M+   LPSP+     R++ L
Sbjct: 3   WLPLSSALLSMVVDKLPSPLEIPGERVDKL 32


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +3

Query: 39  FNPQTKKWSKQKDDDNKRSFCMYVLDPIYKVFDAIMKFKKEEIDDLLKKIGVTI 200
           ++P T KW        +R  C  +   I+  +    K  +  ++D  K +GVT+
Sbjct: 443 YDPHTNKWKMVSPMLKRRGECFAIRKGIFVEWTLCFKAMEMNLEDQNKGVGVTV 496


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 123 YKVFDAIMKFKKEEIDDLLKKIGVTI 200
           Y+    I K  K+EIDDL KK+G+ +
Sbjct: 482 YEEHPEITKQSKQEIDDLRKKMGIKV 507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,488,189
Number of Sequences: 59808
Number of extensions: 549970
Number of successful extensions: 1600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)