Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8g23
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 32 0.032
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 29 0.22
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||... 29 0.39
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 0.90
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 2.7
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 2.7
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 25 4.8
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 6.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 8.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 8.4
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 32.3 bits (70), Expect = 0.032
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +2
Query: 59 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTL 238
D D SL + V N+ +ND+I N+ + +LS D + TFT+
Sbjct: 196 DNDDSLDILNVPNL-VNDDIANNNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTM 254
Query: 239 HRFVDDNVLTQDE 277
++F D +VL +D+
Sbjct: 255 NKFADLSVLEEDD 267
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 59 DKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSV 226
D D + L R+ +F+ND + + +K + S R+ V L+HAL N++++
Sbjct: 514 DSD-NASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYVRRLVHALANDLNL 568
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 29.5 bits (63), Expect = 0.22
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 122 NDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANFL 301
+D++ +T D N+ ++ + F I ALL + ++F+DDN T S + F
Sbjct: 308 SDRLDAASQTTDFVNQWTKESLFFQICALLTTALIL--ANKFLDDNTFTNQSWSQVTGFR 365
Query: 302 VTKLDEAYQ 328
L+ Q
Sbjct: 366 TALLNSFEQ 374
>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
3|||Manual
Length = 126
Score = 28.7 bits (61), Expect = 0.39
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 44 EQVYPDKDFSLKLKRVINMFLNDEIEN--DKIYKLVETVDSSNKLSRRQVDFLIHALL 211
+QV+PD S + R++N F+ND E + KL + + +S R++ + +L
Sbjct: 46 KQVHPDTGISNQAMRILNSFVNDIFERIATEASKLA-AYNKKSTISSREIQTAVRLIL 102
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.5 bits (58), Expect = 0.90
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 315 SSFVTRKFAKKLSSSCVKTLSSTNLCNVNVTLT 217
SSF+ RKF LSSS ++ L++ N++ T
Sbjct: 858 SSFINRKFGVLLSSSFIQQLNTVENLNLSFNST 890
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 333 GNWYASSSFVTRKFAKKLSSSCVKTLSST 247
G WY+ S T K+L SC L ST
Sbjct: 665 GWWYSVESSSTAYLLKQLEKSCTLALKST 693
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 2.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +2
Query: 110 DEIENDKIYKLVETVD------SSNKLSRRQVDFLIHAL 208
+EIEN+ + K VET+D + K+S++ V FL H +
Sbjct: 164 EEIENELLTKGVETIDFEHATTTKPKVSKQVVAFLQHGI 202
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 6 CPWSKPLLAIG 38
CPW K LLA+G
Sbjct: 340 CPWQKSLLAVG 350
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 6.3
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 2 KVSVV---KTTLSDWLCEQVYPDKDFSLKLKRVINMFLNDEIENDKIYK 139
KVS++ K L + + V+P + L LKR++ + + +N +++K
Sbjct: 638 KVSIIYLEKLLLDNKFNDTVFPTRLALLYLKRILELEETTDFKNQEVFK 686
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 140 VCRFCHFQFHRLKTC*LL 87
VCR CH H TC L+
Sbjct: 150 VCRTCHTDTHTSSTCPLI 167
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -3
Query: 333 GNWYASSSFVTRKFAKKLSSSCVKTLSST 247
G WY+ S T K+ +C + LSS+
Sbjct: 1555 GWWYSVESSATPHLLKQFEQACQQALSSS 1583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,553
Number of Sequences: 5004
Number of extensions: 22412
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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