Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8g17
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   0.40 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   1.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   1.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   1.2  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   1.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   2.1  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    24   4.9  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    24   4.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   6.5  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    24   6.5  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    24   6.5  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    23   8.6  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 123  KRLQSLLKSHHFRNDAKTLAYFGYYLTHTG----TLKTFCCGVQNSSPTKHDHLNNCVYY 290
            +RLQS   +   R   + L + GY +++ G    T+ T   G+ +  P  +D     ++Y
Sbjct: 836  RRLQSTELARIMRESPRPLVFLGYVVSNVGQEPQTILTRDTGMLDIEPADYDRWCQYIFY 895

Query: 291  LEIK 302
              +K
Sbjct: 896  RGVK 899


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 162 NDAKTLAYFGYYLTHTGTLKTF 227
           ND  T+  + Y LTH+GTL+TF
Sbjct: 314 NDIDTI--YVYILTHSGTLETF 333


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -3

Query: 154  WWLFSKLCNLL 122
            W LFSKLCNLL
Sbjct: 1107 WGLFSKLCNLL 1117


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 YFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCC 233
           Y + +   QSL+  ++F ND   L+ +G+ L     L+ FCC
Sbjct: 522 YNEQMSSAQSLV-DNYFNND-HDLSRYGFLLVSLLRLRQFCC 561


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +3

Query: 75  NLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTG 212
           NL  KN  N  Y+D      +    H+ R+ A  LAY     TH G
Sbjct: 116 NLLKKN--NRIYYDERNETFTFKPLHNIRSGAGLLAYLDSQKTHVG 159


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 15  NSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDYVKRLQSLLK 146
           N+RE   S+ + + T+C SF L+H  F+  T+  Y + +  L K
Sbjct: 565 NTREVNSSIEELKITDCLSFLLEHNIFN--TFLVYNEGIVKLNK 606


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  SFNLKHKNFDNPTYFDYVKRLQSLLKS 149
           SF L   +FD  +Y  Y+K     +K+
Sbjct: 71  SFRLSPTSFDKKSYMSYIKGYMKAIKA 97


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 284 YTIV*MIVFGGRRVLNSAAKGFQGSCMS*IVTKIGE 177
           + ++ + V G   +LN A KGF   C +   +++ E
Sbjct: 9   FGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDE 44


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 183 YFGYYLTHTGTLKTFCCGVQNSSPTKH 263
           +FGYY  +      F CG+   S T H
Sbjct: 404 WFGYYSCNNPCTLFFDCGLHKCSKTCH 430


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -2

Query: 170 SVVSKVVAL*QTLQPFNIIKVCRIVKVFMFQIKTFTVG 57
           S ++ V  +   + P N+++ C+ ++  M +IKT   G
Sbjct: 300 SFLNGVCKIETRMSPINLLRACQSIEQEMGRIKTILKG 337


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 105 TYFDYVKRLQSLLKSHHFRNDAKTLA 182
           T   YV++L SLLK+ H+  D  + +
Sbjct: 273 TITPYVQQLASLLKNMHYYTDTASFS 298


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 69  FYSWYARVLKQNRTLPDCLS 10
           FY  + + L  N++ P CLS
Sbjct: 577 FYQSFQKALSMNKSQPSCLS 596


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 140 QTLQPFNIIKVCRIVKVFMFQIKTFTVGMLAF*NRI 33
           + L+PF +        V+++Q KTF + +L    RI
Sbjct: 777 ELLEPFRVALTAYEGAVYVYQGKTFIIRLLNINKRI 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,599
Number of Sequences: 5004
Number of extensions: 22563
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)