Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8g17
(324 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14) 29 0.66
SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24) 27 3.5
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 27 4.6
SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33) 27 4.6
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0) 26 6.1
SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022) 26 8.1
>SB_11667| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-14)
Length = 348
Score = 29.5 bits (63), Expect = 0.66
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 188 WLLFNSYRNPENLLLRSSKLVAHQTRSFKQLCILFG 295
++L NS+ NP LRS +L H R FK + ++ G
Sbjct: 287 FMLLNSFTNPLIYCLRSRELRHHMARKFKWVRLVAG 322
>SB_31642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.7 bits (61), Expect = 1.1
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Frame = +3
Query: 21 REACDSVLKREHTNCKSFNLKHKNFDNPTY------FDYVKRLQSLLKSHHFRND-AKTL 179
+E +S L+RE T C+ HK D+ Y + L SL+K +F D K L
Sbjct: 95 QEEYESSLQRERTACERLQTVHKEADSKIYRLSQVNEELKAELDSLIKESNFSKDKLKRL 154
Query: 180 AY 185
Y
Sbjct: 155 VY 156
>SB_26221| Best HMM Match : RVT_1 (HMM E-Value=1.6e-24)
Length = 488
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 111 FDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSS 251
FD V + + K HH+ K L +F +YL+ +T C VQ ++
Sbjct: 192 FDSVSHARLIHKLHHYGFRGKVLDWFAHYLSD----RTQCTVVQGAT 234
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = +3
Query: 75 NLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSSP 254
+L H N D F L + +HH R ++ L + TGT F C N
Sbjct: 148 DLLHCNLDGHEEF-----LDFVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCRPLNVPE 202
Query: 255 TKH 263
TKH
Sbjct: 203 TKH 205
>SB_6590| Best HMM Match : Borrelia_orfA (HMM E-Value=0.33)
Length = 479
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 51 EHTNCKSFNLKHKNFD-NPTYFDYVKRLQSLLKSHHFRN 164
+H NCK LKH N + ++ V++LQ+ + + N
Sbjct: 13 QHNNCKQEQLKHSTTTANKSIYNTVQQLQTRVSTTQHNN 51
>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1462
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 111 FDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSS 251
FD V + + K HH+ K L +F +YL+ +T C VQ ++
Sbjct: 658 FDSVSHARLIHKLHHYGFRGKVLDWFTHYLSD----RTQCTVVQGAT 700
>SB_37665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 30 CDSVLKREHT----NCKSFNLKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAY 185
CD+V R+ +C N+K F PT VKR +LL+S F N L Y
Sbjct: 209 CDAVTLRDRVLAAHDCSVMNVKR--FGGPTETSTVKRQNNLLESEIF-NRPSALNY 261
>SB_34040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 327
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 45 KREHTNCKSFNLKHKNFDNP 104
K++H +C S N+ HK ++ P
Sbjct: 264 KKDHCHCFSLNISHKVYEAP 283
>SB_6954| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 943
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 111 FDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSS 251
FD V + + K HH+ K L +F +YL+ +T C VQ ++
Sbjct: 249 FDSVSHARLIHKLHHYGFRGKVLDWFTHYLSD----RTQCTVVQGAT 291
>SB_804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 153 HFRNDAKTLAYFGYYLTHTGTLKTFCCGVQNSSPTKHD 266
H + T G Y++ G T CCG ++ +P +D
Sbjct: 188 HRAYNPNTYLCCGGYVSWMGNTNTACCGQRSYNPRDYD 225
>SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)
Length = 631
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 320 FFKDLSFYFQIIYTIV*MIVFGGRRVLNSAAKGFQGSCMS*IVTKIG 180
F+K+ YF ++ I IV G LN+A C++ +V +G
Sbjct: 240 FYKEAIAYFPLVVLITGAIVNAGFHKLNNALGNKWTYCLASVVVLMG 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,990
Number of Sequences: 59808
Number of extensions: 152404
Number of successful extensions: 437
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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