Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8g17
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical pr...    31   0.25 
Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical pr...    27   2.3  
DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin p...    27   2.3  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    27   4.1  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    27   4.1  
AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical...    26   5.4  
Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    25   9.5  
AC024840-2|AAX55682.1|  434|Caenorhabditis elegans Hypothetical ...    25   9.5  
AC024840-1|AAF59619.2|  427|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z81485-2|CAB03974.2|  708|Caenorhabditis elegans Hypothetical
           protein C49F5.2 protein.
          Length = 708

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 78  LKHKNFDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGT 215
           L+ K  +NP Y+D +  L      HHF  DAK     G +  H+ T
Sbjct: 519 LREKYKNNPEYYDVLDELSK----HHFHLDAKMQGSVGRFANHSCT 560


>Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical
           protein R06C7.4 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 263 VFGGRRVLNSAAKGFQGSCMS*IVTKIGECFSVVSK-VVAL*QTLQPFNIIKVC 105
           VFG     +SA  GF G+C S  +T   +CF+  +K  + L + L  F  ++ C
Sbjct: 219 VFGWPCQEDSACGGFNGACNS--ITATCDCFAAYTKNNLTLAEALTSFCNVETC 270


>DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin
           proteoglycan-3 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 263 VFGGRRVLNSAAKGFQGSCMS*IVTKIGECFSVVSK-VVAL*QTLQPFNIIKVC 105
           VFG     +SA  GF G+C S  +T   +CF+  +K  + L + L  F  ++ C
Sbjct: 219 VFGWPCQEDSACGGFNGACNS--ITATCDCFAAYTKNNLTLAEALTSFCNVETC 270


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 21  REACDSVLKREHTNCKSFNLKHKNFDNP----TYFDYVKRLQSLLKSHHFRNDAKTLAYF 188
           +EA ++ +KR  + C    L +   +      T+FD  +RL  + K HH     + + + 
Sbjct: 468 KEAIETTIKRTESTCTFCGLYNHTSEKCKKFFTWFDRRERLTEMKKCHHCLEVYEPVEFC 527

Query: 189 GYYL-THTGTLKTFC 230
           G  + T+  +  +FC
Sbjct: 528 GAQMHTNCPSEDSFC 542


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 57  TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 230
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 118 TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 173

Query: 231 CGVQNSSPTKHDHLNNCVYYLE 296
            G  +     + H NNC+  LE
Sbjct: 174 NGSDHRLLRCNLHFNNCLAKLE 195


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 57  TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 230
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 289 TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 344

Query: 231 CGVQNSSPTKHDHLNNCVYYLE 296
            G  +     + H NNC+  LE
Sbjct: 345 NGSDHRLLRCNLHFNNCLAKLE 366


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 57  TNCKSFNLKHKN--FDNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTFC 230
           T C++  L H N  F  P +    KR   +    + R++   +   G ++T T  L +F 
Sbjct: 28  TFCETNRLWHTNSMFKKPMH----KRWTFVSPDGNHRHEIDHILANGKFVTDTTVLPSFT 83

Query: 231 CGVQNSSPTKHDHLNNCVYYLE 296
            G  +     + H NNC+  LE
Sbjct: 84  NGSDHRLLRCNLHFNNCLAKLE 105


>AC024817-55|AAF59563.3|  366|Caenorhabditis elegans Hypothetical
           protein Y54G2A.28 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  KNFDNPTYFDYVKRLQSLLKSHHFRNDAK 173
           K F +P YFD  K   +L + +HF+N A+
Sbjct: 179 KVFISPPYFDESKNPSTLQQYNHFQNYAQ 207


>Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK1128.4 protein.
          Length = 345

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +3

Query: 96  DNPTYFDYVKRLQSLLKSHHFRNDAKTLAYFGYYLTH 206
           D    F  VKRL+ LL S    NDA   A  G  L H
Sbjct: 121 DRNASFLVVKRLRELLSSDALTNDATIGAPLGPALAH 157


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
            C09G1.2 protein.
          Length = 1115

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 161  KRR*NTRLFWLLFNSYRNPENLLLRSSKLVAHQTRSFKQLCI 286
            K+  NTR    L N   +PE  L+R+ K   H T   K+ C+
Sbjct: 888  KQEENTRKRLSLKNEEASPEKTLVRAEKDFNHFTVKKKEECL 929


>AC024840-2|AAX55682.1|  434|Caenorhabditis elegans Hypothetical
           protein Y59H11AL.1b protein.
          Length = 434

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 191 LLFNSYRNPENLLLRSSKLVAHQTRSFKQLCILF 292
           ++ N     EN  ++    + H T S K LCILF
Sbjct: 23  MMRNEPTTTENPAVQEMNHIYHLTPSMKMLCILF 56


>AC024840-1|AAF59619.2|  427|Caenorhabditis elegans Hypothetical
           protein Y59H11AL.1a protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 191 LLFNSYRNPENLLLRSSKLVAHQTRSFKQLCILF 292
           ++ N     EN  ++    + H T S K LCILF
Sbjct: 23  MMRNEPTTTENPAVQEMNHIYHLTPSMKMLCILF 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,973,435
Number of Sequences: 27780
Number of extensions: 123811
Number of successful extensions: 411
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)