Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8g17
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   2.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   6.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   6.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   8.6  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 261 VWWATSFELRSKRFSGFLYELNSNQN 184
           V++   FE  S   S  LYEL  NQ+
Sbjct: 300 VFFLAGFETSSTTMSNALYELALNQD 325


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 263 RSFKQLCILFGNKMINL*K 319
           R  K +C L GNK+I + K
Sbjct: 79  RKVKSVCTLDGNKLIQVQK 97


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 69  SFNLKHKNFDNPTYFDYVKR 128
           S+ L  KN+D+PT    +KR
Sbjct: 30  SYLLNCKNYDHPTTLLKLKR 49



 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 182 LFWLLFNSYRNPENLLL 232
           L W L ++  NP N+LL
Sbjct: 301 LHWQLPHNSTNPPNILL 317


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 180 AYFGYYLTHTGTL 218
           AYFG+Y T  G L
Sbjct: 192 AYFGFYDTARGML 204


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 180 AYFGYYLTHTGTL 218
           AYFG+Y T  G L
Sbjct: 192 AYFGFYDTARGML 204


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 192 YYLTHTGTLKTFCC 233
           + +T   T KTFCC
Sbjct: 446 FNVTDGETTKTFCC 459


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 126 RLQSLLKSHHFRNDAK 173
           R+++L ++H F NDA+
Sbjct: 223 RVRNLNRTHGFPNDAQ 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,585
Number of Sequences: 438
Number of extensions: 1361
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)