Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8g11
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    30   0.019
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.42 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    24   0.97 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    24   1.3  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    24   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.0  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 158 RGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAY-HVLCSKCASEKEVCAKCC 334
           R V Q+C    +      ++ P  +PT   SC   T    Y  + C +  +EK+ C  C 
Sbjct: 743 RNVPQKCIFNGQAYFPGSRFHPFLIPTGFDSCTVCTCDAKYLEIKCKRIYNEKQCCKNCA 802

Query: 335 Q 337
           +
Sbjct: 803 R 803


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 68  RPQKHQNRAAFKNDLHDTSHKTKFINSL-EIRGVCQRCKNILEWKIKYKKYKPLAVPT 238
           R ++H   ++F N+LH  S K KF  S  +  G          W+I+ K Y P  +PT
Sbjct: 91  RHERHFE-SSFGNNLH--SEKAKFNESKWQDSGESPGFTTERNWEIREKPYTPPRLPT 145


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
 Frame = -2

Query: 249 LVHLVGTASGLYFLYL----IFHSRMFLHR*QTPRISKEFINLVLWLV--SCRSFLKAAR 88
           L H+VGT SG++   L    I + ++  ++ +  R   E I + + +V  SCR+F  AAR
Sbjct: 253 LWHIVGTFSGIFLCDLIRREIANVQVLAYKIEAKRRDNE-IKMFVKIVDASCRNF-TAAR 310

Query: 87  FW 82
           F+
Sbjct: 311 FF 312


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 200 IKYKKYKPLAVPTKCTSCLEKTVKHAY 280
           +  K+  P A+ T C  C EK    AY
Sbjct: 58  VDLKRVLPEALQTNCAKCTEKQRTAAY 84


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +2

Query: 110 LHDTSHKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVL 289
           LH       +IN L  +G C       E + + KK  P A+ T C+ C E   K A  +L
Sbjct: 47  LHSKRLLLNYINCLLEKGPCSP-----EGR-ELKKILPDALVTNCSKCSEVQKKQAGKIL 100


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 200 IKYKKYKPLAVPTKCTSCLEK 262
           ++ KK  P A+ T C+ C EK
Sbjct: 63  LELKKNMPDAIETDCSKCSEK 83


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 501 NISSIVLIDAGVFFCVPSS 445
           NI++I   D G++ CV SS
Sbjct: 477 NITAIHTNDGGLYRCVASS 495


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/26 (19%), Positives = 19/26 (73%)
 Frame = +3

Query: 39  VYPEEILIERDRKNTKTGQLSRTICM 116
           ++ +++++ +D+K +++ + +  ICM
Sbjct: 211 LWAKKLIVVKDKKKSRSDEQTIDICM 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,720
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)