Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8g05
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    48   1e-06
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    31   0.18 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    31   0.23 
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    29   0.94 
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    28   1.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   2.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   6.6  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   8.7  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
            Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 18/45 (40%), Positives = 30/45 (66%)
 Frame = +2

Query: 614  KYETELEINDFPQQARWRVTSKEALALISEYSEAGITVRGTYVQP 748
            +Y+ ++EIND+PQQARW VT+   +  ++E +   IT +G +  P
Sbjct: 913  EYKAKMEINDYPQQARWAVTNNTNIVHVTELTGTSITTKGNFYLP 957



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   TPEQGRYAGDVLRAFELAGVSPPAELKNLWEKYKEAQEKDGKKVHTXXXXXXXXXXXDES 181
           TPEQ +YA D+ +A +++    P EL+ L  ++ E  +   +K              DE+
Sbjct: 773 TPEQEKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDET 832

Query: 182 -EAQAASEKKKY 214
             A+   ++K Y
Sbjct: 833 RNAERKMQRKAY 844


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 20  YAGDVLRAFELA--GVSPPAELKNLWEKYKEAQEKDGKKVHTXXXXXXXXXXXDESEAQA 193
           YA  V + F+    GV    ++KNL + YKEA E+ G+K+             + +E  A
Sbjct: 14  YATGVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITKECLKGKKPENTEDGA 73

Query: 194 ASEK 205
            S K
Sbjct: 74  TSNK 77


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 156 PLN-PPPVCTFFPSFSCASLYFSHRFFSSAGGLTPASSKALSTSPAYRPCSGV 1
           P+N PPP+CT        S + SH  +    GLTP S  +  T+ + R C  +
Sbjct: 177 PINIPPPLCTPSVVSDTFSEFASHAEYPGFSGLTPFSIHS-PTASSVRSCQSI 228


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 386 ELARRLASRINLAKGLGADQKGATQQAAEAILKGAPSQTLITAKTVAEQL-AAKLNTRLN 562
           E+ARR+ +  +    L  + +GA + A     +   S+ L+T   +A  +  +++N  +N
Sbjct: 367 EIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVN 426

Query: 563 YQPRDDNTNEPTEEVF 610
           Y    D    P  + +
Sbjct: 427 YDMPLDQAGRPDPQTY 442


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +2

Query: 527 EQLAAKLNTRLNYQPRDD-NTNEPTEEVFRKYET-ELEINDFPQQARWRVTSKEALALIS 700
           E L  K N  + +   +  NT+E T +V +KYE  +++I  F  Q+R+    KE L  + 
Sbjct: 149 EHLNRKYNVNVPFVLMNSFNTDEATAKVIKKYEAHKIDILTF-NQSRYPRVHKETLLPVP 207

Query: 701 EYSEAGI 721
             +++ I
Sbjct: 208 HTADSAI 214


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 726 TVIPASEYSLIRASASLLVTLHLACCGKSLISSSVSYLRNTSSVGSFV 583
           TVI A  +S +  S+   V+L+     +S   SS S  RN+ S GS+V
Sbjct: 730 TVISAYNFSTMIRSSMQFVSLYYIRTHQSNTLSSESESRNSESSGSYV 777


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 336 PCPVPPRLLLARRTESWS*RGGSRPASTSPRDSAQTRRAPRNKPP 470
           P PVPP     R +++ S   GS PA+T+   ++  ++ P   PP
Sbjct: 187 PLPVPPP---RRVSQNSSYASGSVPAATAASTASPVKKPPPPAPP 228


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 464 AAEAILKGAPSQTLITAKTVA---EQLAAKLNTRLNYQPRDDNTNEPTEEVFRKYETELE 634
           + ++ILK AP+Q   +AKT A    ++A K   R N    D ++      V  + E   E
Sbjct: 385 STQSILKTAPTQLSASAKTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEALKE 444

Query: 635 INDFPQQARWRVTSKE 682
                +Q   R+ +++
Sbjct: 445 ARKLSEQLPNRIFAQD 460


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 506 ITAKTVAEQLAAKLNTRLNYQPRDDNTNEPTEEVFRKYETELEINDF 646
           IT +   E L   L++ ++ +  D +  E  E VFR+ +    IN+F
Sbjct: 44  ITEQPKYEHLEQYLDSYVSLEDGDHDPKEAKELVFREVQLRHRINEF 90


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 379 KAGVS-AAARVPHQPRQGTRRRPEGRHATSRR 471
           ++G++ ++  + HQ +Q  RRR   +HA  R+
Sbjct: 514 RSGIAISSTEMDHQQKQARRRRVRRKHAEKRK 545


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 397 AARVPHQPRQGTRRRPEGRHATSRRGDPQGRAFADTHHG*NSGGTAGREVEHATQLP 567
           A +VP+     T     G   +S +GDPQ   F    +  NS G A    + ++ +P
Sbjct: 376 ATQVPNPQNTPTTTAVPGITNSSNQGDPQASTFNGVPNA-NSSGFAAHTQDLSSVIP 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,637
Number of Sequences: 5004
Number of extensions: 41511
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)