Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8g05
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 64 9e-11
08_01_0397 - 3509186-3510291,3510322-3512335 61 8e-10
09_06_0352 + 22472369-22472731,22472829-22472941,22473420-224742... 37 0.020
03_01_0621 + 4574426-4574657,4574751-4574852,4575637-4575908,457... 33 0.18
03_04_0069 - 17022468-17023361 31 1.3
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 30 2.3
08_02_0508 - 17986695-17986775,17987087-17987209 29 3.0
06_03_0828 + 25137782-25138312,25141349-25141588 29 3.0
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 29 3.0
06_01_0276 + 2035763-2036770 29 3.9
04_04_1591 + 34647817-34648416 29 3.9
09_04_0121 - 14840494-14841276 29 5.2
12_02_0046 + 12830974-12832386 28 6.9
11_04_0123 + 13707151-13707668,13708622-13708955,13712414-137126... 28 6.9
06_02_0272 + 13646814-13647305,13647983-13648612 28 6.9
03_05_0205 - 21965782-21965979,21969169-21969417 28 9.1
>08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 64.5 bits (150), Expect = 9e-11
Identities = 43/118 (36%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Frame = +2
Query: 422 AKGLGADQKGATQQAAEAI------LKGAPSQTLITAKTVA-----EQLAAKLNTRLNYQ 568
A+ + A Q AT AA+A ++ + +L++ VA E A L LN Q
Sbjct: 718 AQAIAAAQAAATLAAAKAASNANQQVQSTNAGSLLSIPVVANAPNNEATARALQAALNIQ 777
Query: 569 PRDDNTNEPTEEVFRKYETELEINDFPQQARWRVTSKEALALISEYSEAGITVRGTYV 742
+ V YE EL+INDFPQ ARW++T KE L I +++EA IT RGT++
Sbjct: 778 --QNLARIQAHVVPEHYEVELDINDFPQNARWKITHKETLGPIQDWTEAAITTRGTFI 833
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +2
Query: 617 YETELEINDFPQQARWRVTSKEALALISEYSEAGITVRGTY 739
YE ELEINDFPQ ARW++T KE L I E++ A IT RGT+
Sbjct: 940 YEAELEINDFPQNARWKITHKETLGPIQEWTGAAITTRGTF 980
>09_06_0352 +
22472369-22472731,22472829-22472941,22473420-22474226,
22474314-22474620,22474862-22475027,22475491-22475534,
22476019-22476161,22477900-22477937,22478032-22478129,
22478130-22478220,22478514-22478693,22479311-22479495,
22479583-22479678,22480151-22480297,22480763-22480864,
22480932-22481564
Length = 1170
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 342 PVPPRLLLARRTES-WS*RGGSRPASTSPRDSAQTRRAPRNKP 467
P PPRL+ R+++S W G SR S P ++ RRA R P
Sbjct: 5 PPPPRLMTRRQSDSDWDWDGSSREGSPDPASASAVRRAARRWP 47
>03_01_0621 +
4574426-4574657,4574751-4574852,4575637-4575908,
4576207-4576395
Length = 264
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = -3
Query: 195 AAWASDSSN---LKPFPLNPPPVCTFFPSFSCASLYFSHRFFSS-AGGLTPASSKALST 31
AA ASD ++ L P + PPP ++ + S A Y + + SS AGG+ PAS + T
Sbjct: 24 AATASDYAHYPRLSPEDVAPPPPPSYHAAASSAPPYSGNPYVSSPAGGVAPASKNTMDT 82
>03_04_0069 - 17022468-17023361
Length = 297
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/51 (43%), Positives = 24/51 (47%)
Frame = +1
Query: 457 ATSRRGDPQGRAFADTHHG*NSGGTAGREVEHATQLPAARRQHKRTDRGGV 609
A RRG +GRA A GG A R V H P A R +R RGGV
Sbjct: 246 AGGRRGVRRGRAGARGARVRRVGGRAARRVRHLGAPPCAPR--RRLRRGGV 294
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 535 GREVEHATQLPAARRQHKRTDRGGVPQVRDRAG 633
GR++E++TQL AAR + R G V ++++ AG
Sbjct: 65 GRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAG 97
>08_02_0508 - 17986695-17986775,17987087-17987209
Length = 67
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 186 ASDSSNLKPFPLNPPPVCTFFPSFS 112
AS S L PFP PPP +PSF+
Sbjct: 36 ASRSPELPPFPSPPPPNVISYPSFA 60
>06_03_0828 + 25137782-25138312,25141349-25141588
Length = 256
Score = 29.5 bits (63), Expect = 3.0
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Frame = +1
Query: 424 QGTRRRPEGRHATSRRGDPQGR------AFADTHHG*NSGGTAGREVEHATQLPAARRQH 585
+G +RR EGR +R G+ +GR A +H GG A RE+ AAR
Sbjct: 63 RGRQRRQEGRQIRARLGEGEGRRRRGRGAARRSHAEERRGGAASREIAMRRSGVAAR--- 119
Query: 586 KRTDRGGVPQVRDRAGDQ*LPAAGQVE---GH*QGGASSNQRVLRGRYNGPRHVRP 744
P R G G++E G + + + G G R RP
Sbjct: 120 SAASTHSTPWRRTTGGRWARGGGGRLEAGGGAAEEAGGGERAAVSGEQRGRRRGRP 175
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 360 LLARRTESWS*RGGSRPASTSPRDSAQTRRAPRNKP 467
L RR E GG RPA TSP +++ RR PR P
Sbjct: 581 LRRRRLEGERGAGGGRPALTSP--ASRRRRCPRPDP 614
>06_01_0276 + 2035763-2036770
Length = 335
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 162 PFPLNPPPVCTFFPSFSCAS-LYFSHRFFSSAGGLTPASSKALSTSPAYRPCS 7
P L PPP FFP + S L F H S+ + A SK S +P++ P S
Sbjct: 10 PVMLAPPPPLPFFPIAAVQSGLGFMH--MSAPPEIVTARSKLNSDAPSFSPRS 60
>04_04_1591 + 34647817-34648416
Length = 199
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 GVSAAARVPHQ-PRQGTRRRPEGRHATSRRGDPQGRAFADTHHG*NSGGTAGREVEHATQ 561
G + AA +P RQ + + GR + +GD + HG GG G+E E +
Sbjct: 102 GDAGAAAMPVALERQEAKTKTAGR-LIATQGDDKSGGGGGNEHGKEGGGGGGKEAEKSKS 160
Query: 562 LPAARRQHKR 591
HK+
Sbjct: 161 CVTKEECHKK 170
>09_04_0121 - 14840494-14841276
Length = 260
Score = 28.7 bits (61), Expect = 5.2
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Frame = +1
Query: 379 KAGVSAAARVPHQPRQGTRRRPEGRHATSRRGDPQGRAFADTHHG*NSGGTAGREVEHAT 558
+ +AAA H R RP R + P+GR + H A R + +
Sbjct: 21 QCAAAAAAATDHPTRASKLARPPRRGGRANGRQPRGRGSSSHSH----RAAAPRPSQSQS 76
Query: 559 QLPAARRQ--HKRTDR-----GGVPQVRDRAGDQ*LPAAGQVEGH*QGGASSNQRVLRGR 717
Q+ A + K DR G V A DQ AA E H + A++ QRV +
Sbjct: 77 QMRAMEKVVILKLGDRFAPEIGAAVAVEAPAADQCGAAAAAAEEHAEPVAAAGQRVAPAK 136
Query: 718 YNGP-----RHVRPA 747
P R++ PA
Sbjct: 137 KAEPVAEADRYIAPA 151
>12_02_0046 + 12830974-12832386
Length = 470
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 342 PVPPRL-LLARRTESWS*RGGSRPASTSPRDSAQTRRAP 455
P PPRL + + ++ GGS PAS + R S T AP
Sbjct: 198 PAPPRLEAVITQQQATMKMGGSVPASKATRQSCVTASAP 236
>11_04_0123 +
13707151-13707668,13708622-13708955,13712414-13712659,
13712790-13712867
Length = 391
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 21 TRATCSGPSSWPESVLP 71
T A+CS P +WPE V+P
Sbjct: 3 TTASCSLPDAWPEPVVP 19
>06_02_0272 + 13646814-13647305,13647983-13648612
Length = 373
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -3
Query: 198 EAAWASDSSNLKPFPLNPPPVC-TFFPSFSCASLYFSHRFFSSAGGLTPASSKALSTSPA 22
+A++ + N P + PPP FFPS F S G SS+ LS A
Sbjct: 277 DASFGTGQYNPAPLAVEPPPPPPAFFPSLRSLQENLQLPLFLSGGMQAGVSSQPLSGGGA 336
Query: 21 YRPCSGV 1
+ SG+
Sbjct: 337 FHWQSGM 343
>03_05_0205 - 21965782-21965979,21969169-21969417
Length = 148
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 599 RSVRLCCRLAAGS*VACSTSRPAV 528
R +RL CR A S AC +RPAV
Sbjct: 10 RHLRLACRRAPPSAAACGGARPAV 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,474,314
Number of Sequences: 37544
Number of extensions: 390242
Number of successful extensions: 1721
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -