Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8g05
(749 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 202 1e-51
AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein. 198 2e-50
AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein. 198 2e-50
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 40 0.013
BC007570-1|AAH07570.1| 649|Homo sapiens FBF1 protein protein. 33 1.4
AK057261-1|BAB71400.1| 209|Homo sapiens protein ( Homo sapiens ... 33 1.4
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 32 2.5
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 32 2.5
>BC012304-1|AAH12304.1| 1031|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46 protein.
Length = 1031
Score = 202 bits (492), Expect = 1e-51
Identities = 111/254 (43%), Positives = 147/254 (57%), Gaps = 5/254 (1%)
Frame = +2
Query: 2 TPEQGRYAGDVLRAFELAGVSPPAELKNLWEKYKEAQEKDGKKVHTXXXXXXXXXXXDES 181
T +Q RYAGD+++A EL+G + P +L+ LW +K+ Q+ +GK + DE+
Sbjct: 724 TEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 783
Query: 182 EAQAASEKKKYQKAALGXXXXXXXXXXXXXXXXIETMLAAKKIVKEIKXXXXXXXXXXXX 361
E A+E+KK QKAALG IE+M +KK VK++
Sbjct: 784 EQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTA 843
Query: 362 XXXTDGKLELARRLASRINLAKGLGADQKGATQQAAEAILKGAPSQT-LITAKTVAEQLA 538
KLE+A+RLA RIN K LG + + QQA AIL+G ++AKT+AEQLA
Sbjct: 844 GNAE--KLEIAKRLALRINAQKNLGIESQDVMQQATNAILRGGTILAPTVSAKTIAEQLA 901
Query: 539 AKLNTRLNYQPRDDNTNEPTE----EVFRKYETELEINDFPQQARWRVTSKEALALISEY 706
K+N +LNY P + E + E F++YE ELEINDFPQ ARW+VTSKEAL ISEY
Sbjct: 902 EKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISEY 961
Query: 707 SEAGITVRGTYVQP 748
SEA IT+RGTY P
Sbjct: 962 SEAAITIRGTYFPP 975
>AF106680-1|AAD43033.1| 1031|Homo sapiens RNA helicase protein.
Length = 1031
Score = 198 bits (483), Expect = 2e-50
Identities = 112/255 (43%), Positives = 147/255 (57%), Gaps = 6/255 (2%)
Frame = +2
Query: 2 TPEQGRYAGDVLRAFELAGVSPPAELKNLWEKYKEAQEKDGKKVHTXXXXXXXXXXXDES 181
T +Q RYAGD+++A EL+G + P +L+ LW +K+ Q+ +GK + DE+
Sbjct: 723 TEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 782
Query: 182 EAQAASEKKKYQKAALGXXXXXXXXXXXXXXXXIETMLAAKKIVKEIKXXXXXXXXXXXX 361
E A+E+KK QKAALG IE+M +KK VK++
Sbjct: 783 EQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTA 842
Query: 362 XXXTDGKLELARRLASRINLAKGLGAD-QKGATQQAAEAILKGAPSQT-LITAKTVAEQL 535
KLE+A+RLA RIN K LG + Q QQA AIL+G ++AKT+AEQL
Sbjct: 843 GNAE--KLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQL 900
Query: 536 AAKLNTRLNYQPRDDNTNEPTE----EVFRKYETELEINDFPQQARWRVTSKEALALISE 703
A K+N +LNY P + E + E F++YE ELEINDFPQ ARW+VTSKEAL ISE
Sbjct: 901 AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISE 960
Query: 704 YSEAGITVRGTYVQP 748
YSEA IT+RGTY P
Sbjct: 961 YSEAAITIRGTYFPP 975
>AB018344-1|BAA34521.2| 1058|Homo sapiens KIAA0801 protein protein.
Length = 1058
Score = 198 bits (483), Expect = 2e-50
Identities = 112/255 (43%), Positives = 147/255 (57%), Gaps = 6/255 (2%)
Frame = +2
Query: 2 TPEQGRYAGDVLRAFELAGVSPPAELKNLWEKYKEAQEKDGKKVHTXXXXXXXXXXXDES 181
T +Q RYAGD+++A EL+G + P +L+ LW +K+ Q+ +GK + DE+
Sbjct: 750 TEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFDET 809
Query: 182 EAQAASEKKKYQKAALGXXXXXXXXXXXXXXXXIETMLAAKKIVKEIKXXXXXXXXXXXX 361
E A+E+KK QKAALG IE+M +KK VK++
Sbjct: 810 EQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPAPTA 869
Query: 362 XXXTDGKLELARRLASRINLAKGLGAD-QKGATQQAAEAILKGAPSQT-LITAKTVAEQL 535
KLE+A+RLA RIN K LG + Q QQA AIL+G ++AKT+AEQL
Sbjct: 870 GNAE--KLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQL 927
Query: 536 AAKLNTRLNYQPRDDNTNEPTE----EVFRKYETELEINDFPQQARWRVTSKEALALISE 703
A K+N +LNY P + E + E F++YE ELEINDFPQ ARW+VTSKEAL ISE
Sbjct: 928 AEKINAKLNYVPLEKQEEERQDGGQNESFKRYEEELEINDFPQTARWKVTSKEALQRISE 987
Query: 704 YSEAGITVRGTYVQP 748
YSEA IT+RGTY P
Sbjct: 988 YSEAAITIRGTYFPP 1002
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 39.5 bits (88), Expect = 0.013
Identities = 22/42 (52%), Positives = 23/42 (54%)
Frame = +3
Query: 342 PVPPRLLLARRTESWS*RGGSRPASTSPRDSAQTRRAPRNKP 467
P PPRL L RR S R SRPA PR + Q RR PR P
Sbjct: 1021 PPPPRLALPRRRRSPP-RPPSRPARRGPRPTPQARRRPRPSP 1061
>BC007570-1|AAH07570.1| 649|Homo sapiens FBF1 protein protein.
Length = 649
Score = 32.7 bits (71), Expect = 1.4
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 527 EQLAAKLNTRLNYQPRD-DNTNEPTEEVFRKYETEL-EINDFPQQARWRVTSKEALA 691
EQL A L RL Q RD + +EV K E L E + +Q RWRVT++++ A
Sbjct: 294 EQLRA-LQERLGQQQRDMEEERSRQQEVIGKMEARLNEQSRLLEQERWRVTAEQSKA 349
>AK057261-1|BAB71400.1| 209|Homo sapiens protein ( Homo sapiens
cDNA FLJ32699 fis, clone TESTI2000435, weakly similar to
CALDESMON. ).
Length = 209
Score = 32.7 bits (71), Expect = 1.4
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 527 EQLAAKLNTRLNYQPRD-DNTNEPTEEVFRKYETEL-EINDFPQQARWRVTSKEALA 691
EQL A L RL Q RD + +EV K E L E + +Q RWRVT++++ A
Sbjct: 88 EQLRA-LQERLGQQQRDMEEERSRRQEVIGKMEARLNEQSRLLEQERWRVTAEQSKA 143
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 31.9 bits (69), Expect = 2.5
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 156 PLNPPPVCTFFPSFSCASLYFSHRFFSSAGGLTPASSKALSTSPAYRPCS 7
P P P PS+S S + R S GG TP S TSP+Y P S
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTS 1626
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 31.9 bits (69), Expect = 2.5
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 156 PLNPPPVCTFFPSFSCASLYFSHRFFSSAGGLTPASSKALSTSPAYRPCS 7
P P P PS+S S + R S GG TP S TSP+Y P S
Sbjct: 1580 PYIPSPGGAMSPSYSPTSPAYEPR---SPGGYTPQSPSYSPTSPSYSPTS 1626
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,039,185
Number of Sequences: 237096
Number of extensions: 1848088
Number of successful extensions: 11135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11121
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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