Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f20
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_33251| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)                   29   3.6  
SB_23230| Best HMM Match : WI12 (HMM E-Value=6.9)                      29   4.8  
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    28   6.3  
SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 403  NENGNPVDVANPPVATSTTGPLQTP 477
            N  GN      PPV T TT P  TP
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 259 KAKNGVWTFRDRNAQLKLGDKIYFWTYVI-KDGLGYRQDNGE 381
           K K   W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 25  KFKPHKWRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_47193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 339 IRPEINLISQF*LSISVSERPNAVFGFCDVPGPMSRFQAFHLFVELAV 196
           +RPE++L  +   S+ V    +  F F     P+S+  A+ + VELAV
Sbjct: 2   VRPELSLTGEASPSLRVEANQDVEFTFILQHTPVSKAHAYRVLVELAV 49


>SB_33251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 244 SRDITKAKNGVWTFRDRNAQLKLGDKIYFWTYVIKD 351
           S D+T+ ++ VW   D     KL D +  WT V+KD
Sbjct: 5   SSDVTEFESMVWRDGDVERSSKLMDGVVVWTGVLKD 40


>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 521 WHVCSGLTIGVLACWGVCSGPVVDVAT----GGLATSTG 417
           W+V +  T GV  CWG C    + ++     GGL  S+G
Sbjct: 312 WYVGAKTTSGVPQCWGYCQASSMKISLLSDYGGLKRSSG 350


>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
          Length = 325

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +1

Query: 391 TEFVNENGNPVDVANPPVATSTTGPLQTPQQASTPIVRPEQT 516
           T+ +    N V V   P+      PL  P  A TP+ RP  T
Sbjct: 98  TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDT 139


>SB_23230| Best HMM Match : WI12 (HMM E-Value=6.9)
          Length = 294

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 605 RLFFSNSSLKIKVPLQILSRPWTTVSDVWHVCSGLTIGVLACWG 474
           RL  S S+L+ ++ L I  RP   V +++ +C    +  +ACWG
Sbjct: 231 RLGLSISTLRSRLTL-IHCRPSFKVRELFAICRSCRVLCIACWG 273


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 480 LGCLQWTRGRCGHRWVGYVYWIPIFIDEF--CY 388
           L CL+ T  +CG  W   +Y + I + +F  CY
Sbjct: 174 LNCLRNTNLKCGGDWANSIYRVAIKLSQFIGCY 206


>SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 464 HCRHPNKPALLSLDRNRRAKRQKQWSK 544
           H R+PNK +LL  +   R+  Q QW+K
Sbjct: 232 HPRYPNKRSLLQFESPPRSGCQIQWAK 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,101,346
Number of Sequences: 59808
Number of extensions: 507897
Number of successful extensions: 1362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)