Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f19
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               218   4e-57
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)                       33   0.21 
SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   1.5  
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          30   2.0  
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 29   3.4  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)        29   4.5  
SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  218 bits (532), Expect = 4e-57
 Identities = 102/123 (82%), Positives = 114/123 (92%)
 Frame = +1

Query: 301 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRI 480
           F+++LPPILNALEV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI I
Sbjct: 88  FDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITI 147

Query: 481 PVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLA 660
           PVG ETLGRIINVIGEPIDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGIKVVDLLA
Sbjct: 148 PVGPETLGRIINVIGEPIDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLLA 207

Query: 661 PYA 669
           PYA
Sbjct: 208 PYA 210


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +1

Query: 409 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAE 585
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 586 APEFVDMSVQQEILVTGIKVVDLLAP 663
           AP  +  +  +E ++TGIK VD L P
Sbjct: 71  APGIIPRTSVKEPMLTGIKAVDSLVP 96


>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
          Length = 231

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 651 IDDFYTSYENLLLHRHVDKLWSFG-MDSSSLVGWDGTALVNRFAD--YIDDASEGFSSH 484
           +DD Y  Y + L+  +VD L+  G +D   + G+     V+ + D  Y+D   +GF SH
Sbjct: 168 VDDLYNGYVDDLIDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDDLYVDGYVDGFQSH 226


>SB_47596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 657

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 500 SDASSM*SANRLTSAVPSQPTRLLLSMPKLQSLS 601
           S +SS  + N+++  +PS P +L LS P+L +LS
Sbjct: 293 SQSSSSENVNQVSYQLPSDPVQLSLSQPQLNALS 326


>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -1

Query: 635 PVTRISCCTDMSTNSGASAW-IAAVLSVGMGPRSSIGSPITLM 510
           P  R+SC   +ST + +S+W I AVL   +  R S+ SP++++
Sbjct: 291 PARRVSCSAAISTFNLSSSWLIMAVLRRPLMLRMSVVSPVSMV 333


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = -1

Query: 593 SGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSM 414
           SG+S+  A +L    GP SS+  P T    P    PTG+ M  P S    P   P  P M
Sbjct: 671 SGSSS--AQMLPPMPGPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGM 725

Query: 413 AMVRTVFSP 387
                  SP
Sbjct: 726 GTHPQQVSP 734


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 593 SGASAWIAAV-LSVGMGPRSSIGSPITLMMRPRV-SAPTGIRMGEPESSTG 447
           +G  A  A+  LS G    +S  S +T   +P   SAPTGI  G+P SSTG
Sbjct: 90  TGTQATSASTGLSFGQLGNTST-STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126 SYCLQSRPFGYEDS-SKQCY*KSITGDWSRCEQT*LCSQGFRQR 254
           S C + +P    +  +K C+ K  TG WS+C    +C  G R+R
Sbjct: 543 SLCTEDKPSSVRNCINKACHLKWYTGQWSKCFA--MCGVGRRRR 584


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 622 ILVTGIKVVDLLAPYA 669
           +L TGIKV+DL+ PYA
Sbjct: 2   VLFTGIKVIDLIEPYA 17


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 463 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 558
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
          Length = 1188

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 14  RPSALDGSLRKEFVIFVTSSILLCCLSTKFS 106
           RPSA    ++  F  F++ S+L+C +S+K S
Sbjct: 27  RPSAWISGVKWVFAFFLSMSLLICIVSSKIS 57


>SB_56185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +2

Query: 398 LYVPLPWTVLKA*SVGNPYSTLAHPFVSRWELKPSDASSM*SANRLTSAVPSQPT 562
           L  P PW          P+     PF   W++KP D +S      + + +P  PT
Sbjct: 46  LGTPTPWNEFLL-----PFDESTFPFGDDWDIKPIDLNSPPRMPSVPTVLPETPT 95


>SB_45224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 632 VTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIR 474
           + R   C   S++     W +  L V + P   +G   TL + PR   P G R
Sbjct: 45  IRRAQSCVLRSSSPATVVWPSEFLEVEIQPE--LGEDCTLAIEPRTDIPVGKR 95


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 442 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 549
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,168,458
Number of Sequences: 59808
Number of extensions: 488860
Number of successful extensions: 1206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)