Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f18
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.8  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/42 (19%), Positives = 23/42 (54%)
 Frame = -1

Query: 621 KSKRFCFITLIIITVNRYF*ICTVISVMTVKCINFQKT*IWI 496
           K +++    L+ +++ R   + T++ V+   C+  + T +W+
Sbjct: 723 KRRQYLCPVLLRVSILRNIIVGTLMMVLGTGCVRIKITGVWL 764


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 164 IMNTNIYLVNSSDPLIRVRTLAYVGNVLRN 253
           I  T   L+N    +I V T AYV  V  N
Sbjct: 428 IEGTTSILINVPSLIIHVSTSAYVATVWIN 457


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 121 CGGCLSSDRKLSETNYEYKHLFGE 192
           C G  S  +KL    YEY+  F +
Sbjct: 278 CSGVHSESQKLVGVCYEYQDRFSD 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,596
Number of Sequences: 336
Number of extensions: 3649
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)