Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f18
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    34   0.024
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    28   1.2  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    28   1.2  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    27   2.1  
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    26   4.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    26   6.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   8.4  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.4  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = +1

Query: 385 IKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTNS 564
           +K N+     ++ L+AN K   +  +   + S   S   +S   E + FD  D D + N+
Sbjct: 364 VKENSTRPYVNSHLVANDKITATPFHSEAVVSPLQSNIRNSDIAEFDEFDIDDADFTFNT 423

Query: 565 KVPVHSNDDEGNETKPLAFIKVEYSDSEN 651
             P+   +DE   +  +  I  E  D EN
Sbjct: 424 TDPI---NDESGASSDVVVIDDEEDDIEN 449


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +1

Query: 280 QARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKD 417
           Q+RKA+DQLL+ + D    ++  + +K + I  + + RN+ L  KD
Sbjct: 32  QSRKAEDQLLRQIFDDQ-NIAVNQITKRNGIQGVGLFRNHFLSDKD 76


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 187 QINVCIHNWFLIISYLNSNS 128
           ++  CIH  F+++ YLN+NS
Sbjct: 446 EVKDCIHRLFMVLYYLNTNS 465


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 425 NLLSFEINLLLRLIANTSMLSVLLNFNFDKVNNGSL 318
           N+ SFE NLL     N    + L N+NF+ VN  SL
Sbjct: 96  NVGSFESNLLDDCFKNRIEYAKLQNYNFEFVNVSSL 131


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 622 IKVEYSD-SENILSEFADEGLTNDG 693
           IK E+S  SEN+L E   EG+  DG
Sbjct: 94  IKEEFSQRSENVLEETRREGMNRDG 118


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 379 LAIKRNNKLISKDNKLIANKKRALSHHNG 465
           L +  N K  SK N++I     +L+H+NG
Sbjct: 72  LLLSSNQKSTSKSNQMIKLLNNSLAHNNG 100


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 136 SSDRKLSETNYEYKHLFGELVGSTNQ--SAHTSLCWECIK 249
           SSD+ + +    YK+++G+L+       S  TS+C E ++
Sbjct: 382 SSDKDVKQLFSNYKNIYGDLIKREGGQISLKTSMCLEILR 421


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 717 FRFCYRISTIIRQAFIGKFTQYIFTIR 637
           +R C    T++R+  IG+F Q+I+  R
Sbjct: 599 YRLCDFRGTLLREEMIGEFKQFIWRPR 625


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 359 LLNFNFDKVNNGSLTNWSS*SC 294
           LL+F+F+KV + SLTN S  +C
Sbjct: 68  LLDFDFEKVCSVSLTNLSVYAC 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,799
Number of Sequences: 5004
Number of extensions: 59900
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)