Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8f18
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_34046| Best HMM Match : DUF1279 (HMM E-Value=0.19) 33 0.24
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16) 33 0.24
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0) 33 0.32
SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9) 31 0.96
SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_13087| Best HMM Match : THAP (HMM E-Value=0.63) 31 1.3
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 30 1.7
SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_15828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 29 5.1
SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_5435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 28 9.0
SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_2181| Best HMM Match : RGS (HMM E-Value=0.11) 28 9.0
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 35.5 bits (78), Expect = 0.045
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 247 KKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLA--IKRNNKLISK-- 414
K K I D K + ++ +L+ + + ++ S TD DVL IK +K+ SK
Sbjct: 5 KTNKTISDIKREIKEKTQLILETATNANLLVDVIELSDTDRSDVLLCFIKSVHKIFSKLL 64
Query: 415 -DNKLIANKK 441
+NKL ANKK
Sbjct: 65 KENKLFANKK 74
>SB_34046| Best HMM Match : DUF1279 (HMM E-Value=0.19)
Length = 287
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 532 DCHDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSD-SENILSEFAD 672
DC GDD T +P ND+ L ++ EY D +EN+L +D
Sbjct: 18 DCGAGDDETTPLIPFDPNDEGAATRLGLQSLREEYPDLNENLLRFLSD 65
>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
Length = 458
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/106 (23%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +1
Query: 148 KLSETNYEYKHLFGELVGST-NQSAHTSLCWECIKKLKNIRDFKGQARKAQDQ-LLQLVK 321
+L++T Y + + +L + +Q A + E ++ L++ D + + R+A +Q + Q ++
Sbjct: 295 ELNQTRYRMEQVKTDLQDAEQHQQAEADIAQEKVEGLESALDEERKRREACEQEIRQHME 354
Query: 322 DPLFTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHH 459
D F+ S+L+ SKT ++ + + K+ + N+ RAL+ +
Sbjct: 355 DLRFSQSELQRSKTSLMNQIQERETEIQRLKNQAELENRVRALTEN 400
>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 647
Score = 32.7 bits (71), Expect = 0.32
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Frame = +1
Query: 43 NNVLFKRIHLETKMALDSFNNLRRSLCGGCLSSDRKLSETNYEYKHLFGELVGSTNQSAH 222
NN HL + A + NNL+ + GG L+ ++L YE + F +G N++A
Sbjct: 135 NNCSDLCFHLNYRSADGTCNNLQHPMWGGSLTPLKRLLRPIYE--NGFNAPIGWINKNAR 192
Query: 223 TS--LCWECIKKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSK-TDNIDVLAIKR 393
S L + N+ D K L D FT++ L FS+ +D D A
Sbjct: 193 PSARLVSTELVAAANVTDDKKHTHMLMQWGQFLDHDMDFTVTSLSFSRFSDGADCTATCE 252
Query: 394 N 396
N
Sbjct: 253 N 253
>SB_36521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 31.5 bits (68), Expect = 0.73
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 394 NNKLISKDNKLIANKKRALSHHNGPEITSAF 486
NNK+ K N N+K ALS+H+ P++ F
Sbjct: 196 NNKVHKKKNSFQENQKAALSYHDRPKVVPKF 226
>SB_54259| Best HMM Match : Retinin_C (HMM E-Value=2.9)
Length = 748
Score = 31.1 bits (67), Expect = 0.96
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +2
Query: 80 KWHWIPLITYGGHYAEA---V*VQIGNYQKPIMNTN-IYLVNS---SDPLIRVRTLAYVG 238
+W+++ +TYG H +A V Y PI+ N Y VN PLI+V YV
Sbjct: 300 EWYYVNQVTYGAHLVQANEWYYVNQVTYGAPIVQANECYYVNQVTHGAPLIQVNECYYVN 359
Query: 239 NV 244
V
Sbjct: 360 QV 361
>SB_52971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 331 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSS 510
FT S K K ++D+L + +++++ S + I + L+HH P T F + DS
Sbjct: 197 FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 253
Query: 511 FLEINTF 531
E + F
Sbjct: 254 AFEFHYF 260
>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Frame = +1
Query: 340 SKLKFSKTDNIDVLAIKRNNKLISKDNKL-IANKKRALSHHNGPEITSAFGSVNPDS--- 507
S+ K S N+ ++N +K KL + +K+ ++ PE+ G P S
Sbjct: 667 SERKGSFPSNLAKAVQQKNMTGPTKPGKLSVDSKENSIEEKEEPELLGTVGLKKPRSHSM 726
Query: 508 ---SFLEINTF----DCHDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSE- 663
S N F DC D + V S D GN+ +P++ + S+ ++ SE
Sbjct: 727 HEESSARSNRFAQQGDCRPSIDIVVNNVETSSTDAPGNDEQPVSQAEYSASNGDDFTSEN 786
Query: 664 FADEGLTNDGANAVT 708
D+ + + VT
Sbjct: 787 HEDKVFSKENNTTVT 801
>SB_13087| Best HMM Match : THAP (HMM E-Value=0.63)
Length = 318
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 331 FTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSS 510
FT S K K ++D+L + +++++ S + I + L+HH P T F + DS
Sbjct: 86 FTWSISK-DKLPSLDILMVLQDHRIASTTKQQIVTRILTLTHHTPPSATHPF--LTADSY 142
Query: 511 FLEINTF 531
E + F
Sbjct: 143 AFEFHYF 149
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 30.3 bits (65), Expect = 1.7
Identities = 26/123 (21%), Positives = 54/123 (43%)
Frame = +1
Query: 355 SKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFD 534
S TDN + +N N +N + S+++ PE +++ S + +S+ N+ D
Sbjct: 83 SNTDNSNSDNSSSDNSSSDNSNSDNSNTDNSTSNNSNPENSTSDNSNSNNSNQDNSNSDD 142
Query: 535 CHDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTNDGANAVTKA 714
+ +TN+ +SN D N + + S+ +N+ S+ + N G++ +
Sbjct: 143 SKPDNSNTNNSNSDNSNTDNSNSDNSTS----DNSNPDNLTSD--NSNTDNSGSDNSSSG 196
Query: 715 KCN 723
N
Sbjct: 197 NFN 199
>SB_28915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 KNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNN-KLISKDNKLIA 432
+NI D A Q+ L+ + + ++ + + D D++ ++ NN + S N ++
Sbjct: 239 ENIDDGSRIAFLLQEPDLRYLVENIWNSQSILSAHDDLFDLVLVRWNNHEEWSPWNCILL 298
Query: 433 NKKRALSHHNGPEITSAFG 489
K+ A +HH +T A+G
Sbjct: 299 KKEEATAHHKLENVTEAYG 317
>SB_15828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 29.1 bits (62), Expect = 3.9
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Frame = +1
Query: 286 RKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKDNKLIANKKRALSHHNG 465
RK +D+L ++ L ++K VLA +N L SK KK+A S
Sbjct: 448 RKKKDKLKEIAD---IRLQEMKAQSRSQEQVLADCQNGNLQSKQKDSSNGKKKAKSSTGD 504
Query: 466 PEIT---SAFGSVNPDSSFLEINTFDCHDGDDSTNSKV-PVHSNDDEGNETKPL---AFI 624
IT +A S + + E F S + ++ P H D E K L A +
Sbjct: 505 KAITITLNASSSASDGDNDSETEPFISQPSRSSVDQRLPPAHEKADTVLEIKSLDQEAEV 564
Query: 625 KVE 633
KVE
Sbjct: 565 KVE 567
>SB_41624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.9
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +1
Query: 427 IANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTNSKVPVHSNDDEGNET 606
I+ ++ L + G + ++GSVNP S D H G T S V + D GN
Sbjct: 491 ISPSRKTLEYQGGVNLVCSYGSVNPTSLTFTWTQTD-HTGHTRTVSNDRVQQSID-GNII 548
Query: 607 KPLAFIK-VEYSDSENILSEFADEGLTN-DGANAVTKAK 717
+ + I+ SD+ N G + D A AV K
Sbjct: 549 ETVLKIRDATTSDAGNYTCTLEGPGPSALDNATAVVDVK 587
>SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 541 DGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLTN 687
+G+ S NS +P + + + L ++ E+SD+ NIL E N
Sbjct: 32 NGEHSDNSNIPEALQGEHSDNSNILETLQGEHSDNSNILETLQGEHSDN 80
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 658 SIYFHY-PNILL**KQEVLFHYPHH 587
+I HY PN+++ V+ HYPHH
Sbjct: 1038 AIVHHYGPNLMISHSHHVIHHYPHH 1062
>SB_23116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/85 (23%), Positives = 37/85 (43%)
Frame = +1
Query: 436 KKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTNSKVPVHSNDDEGNETKPL 615
K L NG E+ DSS + N ++ + ++ N+K ++NDD+ N
Sbjct: 82 KGSVLVRPNGTEMLIDNDDNKNDSSNYDNNNYNNDNDNNDNNNKNNNNNNDDDDNNKND- 140
Query: 616 AFIKVEYSDSENILSEFADEGLTND 690
+Y D+ N ++ D+ N+
Sbjct: 141 --NDDDYDDNNNNNDDYDDDNNNNN 163
>SB_5435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = +1
Query: 244 IKKLKNIRDFKGQARKAQDQLLQLVKDPLFTLSKLKFSKTDNIDVLAIKRNNKLISKDNK 423
I++L + + G ++ +++ +++PL T K SK DV++ ++ + K +K
Sbjct: 28 IQRLLHTSELSGPGKRPRNRTPGTIQEPLKTQIKPDTSKKTLTDVVSEAKSIESAKKTSK 87
Query: 424 LIAN 435
LIA+
Sbjct: 88 LIAD 91
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/106 (19%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +1
Query: 394 NNKLISKDNKLIANKKRALSHHNGPEITSAFGSVNPDSSFLEINTFDCHDGDDSTN-SKV 570
+N + DN I + ++ + N I S+N + + + N +D D+S N +
Sbjct: 330 DNSIYDNDNSSIYDNDNSI-YDNDNSINDNDNSINDNDNSINDNDNSINDNDNSINDNDN 388
Query: 571 PVHSNDDEGNET-KPLAFIKVEYSDSENILSEFADEGLTNDGANAV 705
++ ND+ N+ + +D++N +++ ++ ND N++
Sbjct: 389 SINDNDNSINDNDNSINDNDNSINDNDNSIND--NDNSINDNDNSI 432
>SB_56231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 532 DCHDGDDSTNSKVPVHSNDDEGNETKPLAFIKVEYSDSENILSEFADEGLT 684
DC DGDD V +DD+ ++ + ++ +E +L EG+T
Sbjct: 306 DC-DGDDDDGDDDGVDDDDDDDDDDGDDDCVSLQIEKAEEMLLSMKQEGIT 355
>SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 27.9 bits (59), Expect = 9.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = -3
Query: 223 CAHSD*WIRRVHQINVCIHNWFLIISYLNSNSLRI 119
C + WIR++ +NV + ++++I +SN +++
Sbjct: 45 CVQACAWIRKLSSVNVTLTVFYVLIKLRSSNEIKL 79
>SB_2181| Best HMM Match : RGS (HMM E-Value=0.11)
Length = 1313
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 496 NPDSSFLEINTFDCHDGDDSTNSKVPVHSNDDEGNE 603
+PD + + + +C DG++S + V +ND +GN+
Sbjct: 265 SPDGNDDDTDDTNCSDGNNSGDEDDVVSANDSDGND 300
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,222,292
Number of Sequences: 59808
Number of extensions: 405398
Number of successful extensions: 1233
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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