Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f16
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.88 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.7  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   6.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 183 TMEN*KLLIVNQQYYFITFDHHILNINKKIKYNTKSSGSQKIRSGLN-IPERINKEHTLQ 359
           T+   ++  + ++ Y I+F+  + +  KK+KY  +     K R  LN IP++ N    + 
Sbjct: 140 TLNGHEIKFIRKEEY-ISFESKVFHKLKKMKYLVEVQDEVKPRGVLNIIPKQDNFRAIVS 198

Query: 360 INP 368
           I P
Sbjct: 199 IFP 201


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 462 DEENFPKNDSQGEEEPLSDKASAEEVA 542
           +EE     D+QG + P +D A +E+ +
Sbjct: 689 EEEAMITEDAQGGDAPSADAAESEDAS 715


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 588  FPCHLKNLPHFDSVSMQLLRH*PYH 514
            + CH++N    DSV+ QL+ + P H
Sbjct: 1374 YSCHVENDYGQDSVTHQLIVNAPPH 1398


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 325 IFRPDLIFCDPELLVLYLIFLF 260
           +F PD +F      +LYLIF +
Sbjct: 140 VFVPDYVFFVENEPILYLIFSY 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,473
Number of Sequences: 336
Number of extensions: 3645
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)