Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f15
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    22   5.8  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   5.8  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +3

Query: 30  LTCLFYVFKLYIVVCC 77
           L C++Y + ++++ CC
Sbjct: 255 LVCIYYFYYMHLLFCC 270



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +3

Query: 36  CLFYVFKLYIVVCC 77
           C F +F ++++ CC
Sbjct: 171 CAFIIFTMHLLFCC 184


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/52 (21%), Positives = 22/52 (42%)
 Frame = -1

Query: 330 LYSGTRLLQCPHHGAKNSMIQISSEFVTNLSKLLGVSSITSEDES*RAKDPV 175
           L+ G+   + P H      +Q ++   +N +    + +I   D   R  DP+
Sbjct: 97  LFRGSSTPESPEHYYNQKTLQANNNDASNGNLKFSIDNILKADFGRRITDPI 148


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 291 GAKNSMIQISSEFVTNLSKLLGVSSITSEDES*RAKDPVAQSKIP 157
           G+K ++  I ++++ +  K LGVS      +      PV +  IP
Sbjct: 22  GSKKTVFDIPNDYLNDKYKPLGVSLSNRFKQDAEETVPVKKISIP 66


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 374 LDADEHRSVSQKYGVTGFPTIKIFTG 451
           +DA      ++ YGV GF  I  FTG
Sbjct: 279 IDAGMSGPYTKGYGVMGFNEICEFTG 304


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 131 FIMLHGYFIGILLCATGSLALYDSSSDVIELTPSNFDKLVT-NSDEIWI 274
           FI+  G    I LC T    + D  S   +L  S FD L T  +DE+ I
Sbjct: 159 FILWVGILSTIFLCDTILKKVDDILSQAYKLEAS-FDDLATYETDEVQI 206


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 174 QRGPWPSTIRLQTLSS 221
           +RGP  ST+R Q +SS
Sbjct: 113 ERGPRNSTLRRQQMSS 128


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 174 QRGPWPSTIRLQTLSS 221
           +RGP  ST+R Q +SS
Sbjct: 113 ERGPRNSTLRRQQMSS 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,656
Number of Sequences: 336
Number of extensions: 3578
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)