Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f08
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             226   1e-59
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.061
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.11 
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.3  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     27   7.0  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   7.0  
SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)               27   7.0  
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)                       27   9.3  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  226 bits (552), Expect = 1e-59
 Identities = 103/155 (66%), Positives = 127/155 (81%), Gaps = 12/155 (7%)
 Frame = +3

Query: 21  MADQTERSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTP------------REA 164
           MA+QTER++QKQ  +F NRK+ +G    +K LR+ ++VGLGFKTP            REA
Sbjct: 1   MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60

Query: 165 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 344
           IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61  IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120

Query: 345 VHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 449
            H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 381 GDIVTIGECRPLSKTVRFNVLKV 449
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +3

Query: 201 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 380
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 381 GDIVTIGECRPLSKTVRFNVLKV 449
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 263 LHLHFLNDAGEDAAADRNVTSEGTLLVNVGTLNRLTG 153
           LH+ F  D  E  A   N+ S  T+++N+ T N++TG
Sbjct: 868 LHIDF-GDCFEVTAHLNNINSITTIIINIVTFNKVTG 903


>SB_53154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 131 ILVVSQRFSAPLHTNTFLAVQ 69
           ILV+ Q F  P HTN F+A Q
Sbjct: 78  ILVLVQPFPLPYHTNAFIAAQ 98


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 374 HVPEARRQMHGHIPVPFLEP 315
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 228 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 365
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 440 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHDSS 264
           N+ ++     S  +  YNIT NLH+ E         P+P      FG +  + A D++ S
Sbjct: 76  NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYEES 135


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 172 PSIASRGVLKPRPTSLWYLNG 110
           P++  +GV  PRPT  WY  G
Sbjct: 654 PTLQCKGVGDPRPTITWYRKG 674


>SB_22900| Best HMM Match : DUF1399 (HMM E-Value=0.00019)
          Length = 696

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 254 HFLNDAGEDAAADRNVTSEGTLLVNVGTLNRLTGSLETEAHILVVSQRFSAPLH 93
           HF +D   D A  R    EG      GT+ R    L+T    ++  Q F++ +H
Sbjct: 188 HFCDDNFLDVATQRAFECEGIEYARPGTICRERQPLKTHPSPVIHPQAFASVVH 241


>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 754

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 81  KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 191
           + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 271 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 307


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 81   KGIGVKRSRKPLRYHKDVGLGFKTPREAIEGTYIDKK 191
            + + V + + PL  H D+ + +K P   +   Y+DK+
Sbjct: 1552 EAVKVFKDKVPLNSHLDIKILYKNPEFLVVDLYVDKE 1588


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,973
Number of Sequences: 59808
Number of extensions: 317245
Number of successful extensions: 806
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)