Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8f05
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.) 223 5e-59
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06) 34 0.059
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34) 33 0.10
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 28 3.9
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 5.1
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33) 27 6.8
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 27 6.8
>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 223 bits (546), Expect = 5e-59
Identities = 105/155 (67%), Positives = 127/155 (81%), Gaps = 16/155 (10%)
Frame = +3
Query: 24 MADQTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REA 155
MA+QTE+A+QKQA +F NRK + K+KD+R +NVGLGFKTP REA
Sbjct: 1 MAEQTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREA 60
Query: 156 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMS 335
IEGTYIDKKCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++
Sbjct: 61 IEGTYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLA 120
Query: 336 VHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 440
H SPCFRD+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 121 AHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKV 155
>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
Length = 73
Score = 34.3 bits (75), Expect = 0.059
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 372 GDIVTIGECRPLSKTVRFNVLKV 440
GD+V I ECRPLSK +FNV ++
Sbjct: 29 GDVVRIKECRPLSKMKKFNVEEI 51
>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
Length = 208
Score = 33.5 bits (73), Expect = 0.10
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 192 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 371
T + R ++ G+V KM +TI + + P Y + + + H + +
Sbjct: 5 TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62
Query: 372 GDIVTIGECRPLSKTVRFNVLKV 440
GD V I E RPLS T R+ ++++
Sbjct: 63 GDRVRIMETRPLSATKRWRLVEI 85
>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 174 QCRYPQSPLWEF*SLNQHSYGDACP 100
+C QS LWE SL QH Y + P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529
>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 365 HVPEARRQMHGHIPVPFLEP 306
HV +A R HG++P+P L P
Sbjct: 82 HVDQACRSFHGNLPLPVLAP 101
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 42 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGR 218
+A + T ++RK K+K+ + KN+ K PR T++ + G V++R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275
Query: 219 ILTGVVQK 242
G Q+
Sbjct: 276 ARAGNAQR 283
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 219 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 356
I+ VV K K + VI RD+ Y ++ +R VH SP F
Sbjct: 64 IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109
>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
Length = 732
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 431 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHDSS 255
N+ ++ S + YNIT NLH+ E P+P FG + + A D++ S
Sbjct: 76 NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYEES 135
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -1
Query: 129 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 19
N HS D CP+S C+L C + ++ TL P C
Sbjct: 33 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 72
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = -1
Query: 129 NQHSYGDACPSSSCHLS---CSGKRWPVSETLSLSDPPFC 19
N HS D CP+S C+L C + ++ TL P C
Sbjct: 1330 NDHSDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDC 1369
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,703
Number of Sequences: 59808
Number of extensions: 318656
Number of successful extensions: 767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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