Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f04
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.83 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    28   1.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   1.9  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.9  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 317 KCASEKEVCAKCCQNINIEKQEDKKTDI 400
           +C  E  VC   CQN   ++ E  K D+
Sbjct: 157 ECTDEDNVCGPSCQNQRFQRHEFAKVDV 184


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = +2

Query: 182 GVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK-TVKHAYHVLCSKCASE----KEVCA 346
           G C+  K    W  ++     +    +C    +  T +HA  ++C  CA E    K+   
Sbjct: 327 GACEHYKKSFRW-FRFSCCDRVYPCDECHDADQNHTFEHANRIICGYCAMESFYKKDATC 385

Query: 347 KCCQNINIEKQ 379
             C N+ ++KQ
Sbjct: 386 PHCGNMTVKKQ 396


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 230 KKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVC 343
           KK++  + P  C  C  + VK      CS+C    EVC
Sbjct: 9   KKFRKRS-PKSCLICRRRKVKCDRQQPCSRCKERNEVC 45


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 140 TSHKTKFINSLEIRGVCQRCKNILEWK 220
           +S  T+    L I G+C +CK +L W+
Sbjct: 212 SSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +2

Query: 125  NDLHDTSHKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYH 304
            N L + SH   F N+ +I GV  +  NILE        +   +    +S LE+ VK +  
Sbjct: 1185 NKLINPSHSVIFFNTDDILGVESKTNNILE-----NHTEAFLIEQAVSSFLERGVKQSSI 1239

Query: 305  VLCSKCASEKEVCAK 349
             + S   S+ E+ +K
Sbjct: 1240 GIISIYKSQVELLSK 1254


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 164 NSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 283
           N+ E   VC  C  I++  ++ KK   L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 164 NSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEK 283
           N+ E   VC  C  I++  ++ KK   L+ PT+C+SC ++
Sbjct: 572 NNNESFAVCLACA-IIQRSLERKK---LSTPTQCSSCFQE 607


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 212 EWKIKYKKYKPLAVPTKCTSC-LEKTVKH 295
           +W  K +  KP+A P + TSC +  T++H
Sbjct: 483 KWNRKVQYIKPVAPPYRQTSCYITDTIQH 511


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +2

Query: 302 HVL-CSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSER 430
           HVL  S   S + VC  CC N  +        D+    SG+  +
Sbjct: 437 HVLPTSDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQSGIKRK 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,892
Number of Sequences: 5004
Number of extensions: 44103
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)