Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8f04
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_968| Best HMM Match : HC2 (HMM E-Value=2.5) 30 1.5
SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7) 29 2.7
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 25 4.2
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42) 29 4.7
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 28 6.2
SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1) 28 8.1
SB_18896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_58284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_968| Best HMM Match : HC2 (HMM E-Value=2.5)
Length = 292
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/137 (19%), Positives = 48/137 (35%)
Frame = +2
Query: 80 NRTRPQKHQNRAAFKNDLHDTSHKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPT 259
+R + KH KN + T I R + I++WK ++ +V
Sbjct: 126 SRQQVYKHSVIIKCKNSRQQVNKHTVIIKCKNSRQQVYKYTVIIKWKNSRQQVYKYSVII 185
Query: 260 KCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSERKRR 439
KC ++ KH+ + C + + +Q K T I+ + + +
Sbjct: 186 KCKDSRQQVYKHSVIIKCKNSRQQVNKHTVIIKCKTSRQQVYKYTVIIKWKNSRQQVYKH 245
Query: 440 TVLRYLKNQEDGTQKKT 490
TV+ KN K T
Sbjct: 246 TVIIKCKNSRQQVYKYT 262
>SB_20374| Best HMM Match : zf-U1 (HMM E-Value=1.7)
Length = 783
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 239 KPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQ 358
K L +C CL+ + + LC C ++K+VC +C +
Sbjct: 246 KVLGSTEQCLMCLQNDKRCTF--LCEACYNDKDVCDQCSE 283
>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 691
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 149 KTKFINSLEIRGVCQRCKNILEWKIKYKKY 238
K F+N +R + +RCK +++ +K +K+
Sbjct: 78 KCTFVNDTTVRTIARRCKKLIQLSLKDRKF 107
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 25.0 bits (52), Expect(2) = 4.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 305 VLCSKCASEKEVCAKCCQNIN 367
+ CS+CA + C C +++N
Sbjct: 368 MFCSRCADNMKFCPLCNESVN 388
Score = 22.2 bits (45), Expect(2) = 4.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 278 EKTVKHAYHVLCSKC 322
E+ VKH + CSKC
Sbjct: 338 EQVVKHEWMPKCSKC 352
>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 185 VCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNI 364
+C RCK + + ++++ + PT C S E + ++ L S+ S C + Q I
Sbjct: 780 ICSRCKYVFSAQADFEQFYTIPKPTSCPSG-EGCTSNKFNCL-SEPGSNPTSC-RDYQEI 836
Query: 365 NIEKQEDK 388
I++Q K
Sbjct: 837 KIQEQVQK 844
>SB_39986| Best HMM Match : CNH (HMM E-Value=6.99949e-42)
Length = 952
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 254 PTKCTSCLEKTVKHAYHVLCSKCASEKEVC-AKCCQNI 364
P KC CL+ H + SKCA VC KCC N+
Sbjct: 347 PVKCAVCLDSV--H-FGRQSSKCAECDSVCHIKCCPNL 381
>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 637
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 260 KCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEKQED-KKTDILGK-LSG 418
KC+ CL ++ VLC C + + + N+ E D +K + L K LSG
Sbjct: 105 KCSVCLRTIARNHRAVLCDCCKGQSHIKKRLRDNLEDEILSDSQKVEFLPKFLSG 159
>SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1)
Length = 314
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +2
Query: 65 SRGNTNRTRPQKHQNRAAFKNDLHDTSHKTKFINSLEIRGVCQRCKNILEWK 220
++ + NRTR + N +++LH ++ K+ N C+ + +EWK
Sbjct: 241 TKSSINRTRLNQEGNEILVESELHSSNDKSGSPNEKPKGNRCKENRCNVEWK 292
>SB_18896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 254 PTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQ 358
P+KC V++ ++ C +C + C+ CC+
Sbjct: 76 PSKCKDGQFLDVQNQLYIACDECEDDWMGCSNCCK 110
>SB_58284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 278 EKTVKHAYHVLCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSERKRRTVLRYL 457
EK K A K A ++ K + ++ +E+KK + L KLS +R R R+
Sbjct: 340 EKEKKEAEKRKAQKKAKKQRAKEKKAID-QLKMEEEKKQERLSKLSDREKRARAAEQRFA 398
Query: 458 KNQEDGTQ 481
+ Q + T+
Sbjct: 399 RQQVNSTE 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,147
Number of Sequences: 59808
Number of extensions: 314992
Number of successful extensions: 842
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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