Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8f04
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 31 1.0
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 30 1.8
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 30 1.8
Z81595-4|CAB04751.1| 91|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z80215-15|CAJ30222.1| 99|Caenorhabditis elegans Hypothetical p... 29 3.1
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 29 3.1
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 29 4.1
U88169-3|AAK68396.1| 345|Caenorhabditis elegans Hypothetical pr... 29 4.1
U88169-2|AAB42234.1| 342|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical p... 28 5.4
Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical pr... 28 5.4
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr... 28 5.4
AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical ... 28 5.4
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 28 7.2
>Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical
protein R07E3.5b protein.
Length = 455
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 380 EDKKTDILGKLSGLSERKRRTVLRYLKNQED 472
E+K +DIL + G+SE +R +L+ + Q+D
Sbjct: 396 EEKSSDILNIMQGISEEERDELLKQIDEQDD 426
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 380 EDKKTDILGKLSGLSERKRRTVLRYLKNQED 472
E+K +DIL + G+SE +R +L+ + Q+D
Sbjct: 453 EEKSSDILNIMQGISEEERDELLKQIDEQDD 483
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +2
Query: 239 KPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSG 418
K L KC LE ++ + CSK S EV A+ NIN K + K + K
Sbjct: 236 KRLPYHKKC-EWLEAIIRKCLQMCCSKRCSITEVAAEIEININGVKNNNNKYEYKVK--- 291
Query: 419 LSERKRRTVLRYLKNQEDGTQK 484
E R V + + + DG +K
Sbjct: 292 TVEEMRAAVRKEVADNNDGFEK 313
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 119 FKN-DLHDTSHKTKFINSLEIRGVCQRCKNILEWKIKY--KKYKPLA--VPTKCTSCLEK 283
FKN LH T+ N+ + +C++C ++ K K + A V C C +
Sbjct: 1238 FKNYHLHKTARMLACANN--VPKMCKKCAENVQKMCKKCAKNVQKCAKNVQKMCKKCAKN 1295
Query: 284 TVKHAYHV--LCSKCASE-KEVCAKCCQNI 364
K +C KCA +++C KC +N+
Sbjct: 1296 VQKMCKKCAKMCKKCAKNVQKMCKKCAKNV 1325
>Z81595-4|CAB04751.1| 91|Caenorhabditis elegans Hypothetical
protein T22H2.4 protein.
Length = 91
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 308 LCSKCASEKEVCAKCCQNINIEKQEDKKTDILGKLSGLSERKRRTVLRYLKNQEDGTQKK 487
+C KCA ++CAK C+ K KK GK+ +K L+ K + K
Sbjct: 8 MCKKCAKMCKICAKVCK--KCAKNVQKKCKKCGKMCKKCAKK---CLKKSKFSDPRNPKM 62
Query: 488 TPASI 502
P S+
Sbjct: 63 LPTSL 67
>Z80215-15|CAJ30222.1| 99|Caenorhabditis elegans Hypothetical
protein C36B1.14 protein.
Length = 99
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 239 KPLAVPTKCTSCLEKTVKHAYHVLCSKCASEKEVCAKCCQNINIEK 376
K V KC C + H CS CA +K +CA C + I K
Sbjct: 48 KATIVGAKCKLCKMLIHQPGSHY-CSTCAYQKGICAMCGKKIQNTK 92
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 314 SKCASEKEVCAKCCQNINIEKQEDK--KTDILGKLSGLSE 427
SK ASEKE C CQ+ + K+ KT + K+ +SE
Sbjct: 714 SKGASEKEKCTLICQDAQVRKERYAVGKTKLFCKVGVISE 753
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -1
Query: 252 TASGLYFLYLIFHSRMFLHR*QTPRISKEFINLVLWLVSCKSFLKAARFWCFCGLVLLVF 73
T + Y Y FH ++ +T + FI L +W S K + L+LL+F
Sbjct: 163 TFNECYQKYWEFHEQVVFSLIETLSLLL-FIRLYIWKRSSHLLHKVTQIALLDSLMLLLF 221
Query: 72 PLDKLMVYSFVLS 34
+ L++YS+ S
Sbjct: 222 NISPLLLYSYFSS 234
>U88169-3|AAK68396.1| 345|Caenorhabditis elegans Hypothetical
protein T03F1.6b protein.
Length = 345
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Frame = +2
Query: 116 AFKNDLHDTSHKTKFIN------SLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCL 277
A + ++HD + FIN +L + G C ++++++ +K + P K TS L
Sbjct: 56 ALRVEVHDNDYSVYFINKDSRVTNLNLTG-CD-WEDVIKYGTCIEKLELNICPGKSTSQL 113
Query: 278 EKTVKHAYHVLCSKCASEKEVCAKCCQNI-NIEKQ 379
+T+K A L S + KC Q + N+EK+
Sbjct: 114 FQTIKRASFTLRSLKINVLAGADKCVQKMKNLEKR 148
>U88169-2|AAB42234.1| 342|Caenorhabditis elegans Hypothetical
protein T03F1.6a protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.1
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Frame = +2
Query: 116 AFKNDLHDTSHKTKFIN------SLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCL 277
A + ++HD + FIN +L + G C ++++++ +K + P K TS L
Sbjct: 56 ALRVEVHDNDYSVYFINKDSRVTNLNLTG-CD-WEDVIKYGTCIEKLELNICPGKSTSQL 113
Query: 278 EKTVKHAYHVLCSKCASEKEVCAKCCQNI-NIEKQ 379
+T+K A L S + KC Q + N+EK+
Sbjct: 114 FQTIKRASFTLRSLKINVLAGADKCVQKMKNLEKR 148
>Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical
protein F54B8.11 protein.
Length = 286
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 165 FINLVLWLVSCKSFLKAARFWCFCGLVLLVFPLDKLMVYSFVLS 34
FI L +W S + F K + L+LL+F + + YS+ S
Sbjct: 191 FIRLFIWKNSKQRFCKVTQIALLDSLILLLFNIIPIFFYSYFSS 234
>Z75711-6|CAB00037.3| 387|Caenorhabditis elegans Hypothetical
protein K02B12.8 protein.
Length = 387
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 287 VKHAYHVLCSKCA-SEKEVCAKCCQNINI 370
+ +H+ C+KCA ++ VC C +N+ +
Sbjct: 20 ISSCFHIFCTKCAKADLAVCLICKKNVRL 48
>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
protein C28G1.4 protein.
Length = 1081
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +2
Query: 125 NDLHDTSHKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYH 304
N D + KF +++++ + + + +L + Y+ L K + C + H Y+
Sbjct: 766 NSSQDNENTEKFASNIDV--LYFQMRKVLGRGFPERNYRCLECSFKTSDC-DAMQLHTYY 822
Query: 305 VLCSKCASEKEVCAKCCQNIN 367
SK C++C N+N
Sbjct: 823 HKSSKLEDRNFQCSECTFNVN 843
>AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2A.1 protein.
Length = 382
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 173 EIRGVCQRCKNILEWKIKYKKYKP 244
EIR + Q+ N+L W+I Y + P
Sbjct: 178 EIRDISQKVLNLLNWQILYSSWTP 201
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +2
Query: 29 CLLKTKLYTMSLSRGNTNRTRPQKHQNRAAFKNDLHDTSHKTKFINSLEIR 181
C T++ +MSL +KH+ + +K + D H K++ + R
Sbjct: 737 CSTPTRIVSMSLLGNTFLHIASEKHREKMVYKASISDLDHWRKWVEEVTPR 787
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,783,831
Number of Sequences: 27780
Number of extensions: 252533
Number of successful extensions: 940
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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