Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f01
         (294 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q90176 Cluster: Putative 15 kDa capsid protein; n=5; Nu...   100   5e-21
UniRef50_Q90173 Cluster: Zinc finger protein CG30; n=5; Nucleopo...    47   7e-05
UniRef50_O10338 Cluster: Putative 15 kDa capsid protein; n=4; Nu...    36   0.17 

>UniRef50_Q90176 Cluster: Putative 15 kDa capsid protein; n=5;
           Nucleopolyhedrovirus|Rep: Putative 15 kDa capsid protein
           - Bombyx mori nuclear polyhedrosis virus (BmNPV)
          Length = 126

 Score =  100 bits (240), Expect = 5e-21
 Identities = 43/54 (79%), Positives = 44/54 (81%)
 Frame = +1

Query: 1   ECALNDSRWRDTNNWHHDIKEGVKINKRHIYRVNFNSKTXXXXXXXXXXVECYV 162
           +CALNDSRWRDTNNWHHDIKEGVKINKRHIYRVNFNSKT          VECYV
Sbjct: 71  QCALNDSRWRDTNNWHHDIKEGVKINKRHIYRVNFNSKTKEIKEYYYIKVECYV 124


>UniRef50_Q90173 Cluster: Zinc finger protein CG30; n=5;
           Nucleopolyhedrovirus|Rep: Zinc finger protein CG30 -
           Bombyx mori nuclear polyhedrosis virus (BmNPV)
          Length = 266

 Score = 47.2 bits (107), Expect = 7e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = -3

Query: 286 LIKHKNLLQNEYTTLQSYKC 227
           LIKHKNLLQNEYTTLQSYKC
Sbjct: 232 LIKHKNLLQNEYTTLQSYKC 251


>UniRef50_O10338 Cluster: Putative 15 kDa capsid protein; n=4;
           Nucleopolyhedrovirus|Rep: Putative 15 kDa capsid protein
           - Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 120

 Score = 35.9 bits (79), Expect = 0.17
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 4   CALNDSRWRDTNNWHHDIKEGVKINKRHIYRVNFNSKTXXXXXXXXXXVECYV 162
           C  +++ W  T+NW    + G  +N+RH+Y V+F+++T          V+C+V
Sbjct: 72  CRRHNAAWCTTDNWD---RCG-SVNERHVYEVDFDAQTKAVTERFYVCVQCFV 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,729,131
Number of Sequences: 1657284
Number of extensions: 2151844
Number of successful extensions: 5093
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5093
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 9929495642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)