Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f01
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   1.3  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   2.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    24   4.0  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    23   9.3  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 134 YSLISLVLELKLTLYICLLFIFTPSLIS 51
           YSL+S VL +  T Y  ++F++  S ++
Sbjct: 477 YSLLSRVLVISSTAYFLIMFVYHSSWVT 504


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 101 LTLYICLLFIFTPSLIS*CQLFVSRHRLS 15
           +T ++C   ++T +L+   +LF   HRLS
Sbjct: 156 ITAFVCTFVLYTGTLLFGDRLFDKPHRLS 184


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 22  RWRDTNNWHHDIKEGVKIN 78
           RW   N W H  KE V +N
Sbjct: 618 RWNLVNIWRHIFKETVTLN 636


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 13  NDSRWRDTNNWHHDIKEGVKINKRHIYR--VNFNS 111
           ND + +   NWHH     +++N ++ ++  V+F S
Sbjct: 641 NDLKRKKKFNWHHTSLGVLELNAKNFHKAIVHFQS 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 864,474
Number of Sequences: 5004
Number of extensions: 10120
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)