Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f01
         (294 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         27   2.6  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             25   8.0  
SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.0  

>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 55  YRDANYLCRAIGYRLKRT 2
           Y+DA  +CR +GYR  RT
Sbjct: 494 YKDAIVVCRMLGYRYART 511


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 31  DTNNWHHDIKEGV--KINKRHIY 93
           DTNNW  D+  GV  ++N++ ++
Sbjct: 923 DTNNWETDVSYGVAKEVNRKVVF 945


>SB_30094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 283 IKHKNLLQNEYTTLQSY 233
           +KH N +QN+YTT   Y
Sbjct: 87  VKHINRVQNKYTTFNCY 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,218,520
Number of Sequences: 59808
Number of extensions: 72454
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)