Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8f01
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical pr... 28 1.3
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 27 1.8
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 27 1.8
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 27 1.8
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 27 1.8
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 27 1.8
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 27 1.8
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 27 1.8
U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redunda... 27 2.3
AC084159-21|AAK39355.2| 95|Caenorhabditis elegans Hypothetical... 25 7.1
>Z81509-7|CAJ85751.1| 544|Caenorhabditis elegans Hypothetical
protein F21A3.2b protein.
Length = 544
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 110 ELKLTLYICLLFIFTPSLIS*CQLFVSRHRLSFK 9
E+ L C+LF+F ++S LFVSR FK
Sbjct: 5 EINQFLIYCILFLFMMLIVSIILLFVSRPIYKFK 38
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical protein
C36B1.1d protein.
Length = 1175
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 1086 LNDSRWPDKRVWHGSKDGGIR 1106
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 689 LNDSRWPDKRVWHGSKDGGIR 709
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical protein
C36B1.1a protein.
Length = 1138
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 1049 LNDSRWPDKRVWHGSKDGGIR 1069
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 561 LNDSRWPDKRVWHGSKDGGIR 581
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 1086 LNDSRWPDKRVWHGSKDGGIR 1106
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 689 LNDSRWPDKRVWHGSKDGGIR 709
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 1049 LNDSRWPDKRVWHGSKDGGIR 1069
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 561 LNDSRWPDKRVWHGSKDGGIR 581
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 689 LNDSRWPDKRVWHGSKDGGIR 709
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 10 LNDSRWRDTNNWHHDIKEGVK 72
LNDSRW D WH G++
Sbjct: 1028 LNDSRWPDKRVWHGSKDGGIR 1048
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 1 ECALNDSRWRDTNNWHHDIKEGVKINKRH 87
+CAL D ++ D ++W H ++ +K + H
Sbjct: 500 QCALQDDQYFDVDSWIHQLEMRIKCWQGH 528
>U64849-1|AAC48052.3| 936|Caenorhabditis elegans Daf-12, redundant
with protein 1 protein.
Length = 936
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 19 SRWRDTNNW---HHDIKEGVKINKRHIYRVNFNS 111
SRWRD N W H + GV + K RVN S
Sbjct: 230 SRWRDGNPWKESHRQLHHGVHVMKEP--RVNLRS 261
>AC084159-21|AAK39355.2| 95|Caenorhabditis elegans Hypothetical
protein Y73B3A.10 protein.
Length = 95
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +1
Query: 19 SRWRDTNN--WHHDIKEGVKINKRHIYRVNFNS 111
+RW T+ W H + VK+ + H R NF +
Sbjct: 46 NRWTRTSEEGWKHKVASNVKMIENHRLRHNFQT 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,767,794
Number of Sequences: 27780
Number of extensions: 56843
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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