Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8f01
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   3.1  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   4.2  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   9.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 279 NTKIYYKTSTQHYNH 235
           +++I+Y TS Q+Y H
Sbjct: 199 SSEIFYTTSQQYYGH 213


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 286 LIKHKNLLQNEYTT 245
           L  H NLL N Y+T
Sbjct: 398 LASHNNLLNNVYST 411


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 107 LKLTLYICLLFIFT 66
           +K  L +C LFI+T
Sbjct: 5   IKALLIVCALFIYT 18


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 107 LKLTLYICLLFIFT 66
           +K  L +C LFI+T
Sbjct: 5   IKALLIVCALFIYT 18


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 276 TKIYYKTSTQHYN 238
           TKI +  S QHYN
Sbjct: 60  TKIDFGLSIQHYN 72


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 89  ICLLFIFTPSLIS*CQLFVSRHR 21
           +C+ FI+   L   C  +V R R
Sbjct: 369 VCMCFIYASLLEFVCVNYVGRKR 391


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 89  ICLLFIFTPSLIS*CQLFVSRHR 21
           +C+ FI+   L   C  +V R R
Sbjct: 338 VCMCFIYASLLEFVCVNYVGRKR 360


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 89  ICLLFIFTPSLIS*CQLFVSRHR 21
           +C+ FI+   L   C  +V R R
Sbjct: 389 VCMCFIYASLLEFVCVNYVGRKR 411


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 89  ICLLFIFTPSLIS*CQLFVSRHR 21
           +C+ FI+   L   C  +V R R
Sbjct: 338 VCMCFIYASLLEFVCVNYVGRKR 360


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 90  YMPLVYFHTLFNIVMPIICV 31
           Y P  ++   + I  P ICV
Sbjct: 485 YYPCCWWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 90  YMPLVYFHTLFNIVMPIICV 31
           Y P  ++   + I  P ICV
Sbjct: 538 YYPCCWWKICWTITTPAICV 557


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,525
Number of Sequences: 438
Number of extensions: 823
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)