Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e23
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 114 1e-26
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 31 0.17
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 29 0.70
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 29 0.70
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.6
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 1.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 3.7
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 4.9
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 4.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 6.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.6
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 114 bits (274), Expect = 1e-26
Identities = 61/137 (44%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Frame = +1
Query: 151 TSLANVISNICKKQNNLKFVKLSATTSGINDVKEIVKIAKNDAQFKNQ-TILFMDEIHRF 327
T+LA +I+ K +F+++SAT++ + D ++I + ++N + TI+F+DE+HRF
Sbjct: 134 TTLARLIAVTTKS----RFIEISATSTTVADCRKIFEDSQNYLTLTGRKTIIFLDEVHRF 189
Query: 328 NKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKKAI 507
N+ QQD FLP VE G +TLIGATTENPSF LN+AL+SRC V V+ KLT ++V IL A
Sbjct: 190 NRAQQDIFLPMVEKGLVTLIGATTENPSFRLNSALISRCPVFVLKKLTRDNVKKILNHAC 249
Query: 508 EYNEAKLINTKETVNKS 558
+L ++ V S
Sbjct: 250 LLESERLGSSMPNVETS 266
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 301 LFMDEIHRFNKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVV 453
L +D + KL HVEN + AT P +SL+ +LSRC+ +
Sbjct: 831 LDVDAVASKGKLLVHAVSEHVENAGVHSGDATIALPPYSLSEDILSRCKEI 881
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 28.7 bits (61), Expect = 0.70
Identities = 25/93 (26%), Positives = 41/93 (44%)
Frame = +1
Query: 328 NKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKKAI 507
+ L Q+ FLP I L+G ++ S L + + +DKLT +V +K
Sbjct: 289 SSLLQEGFLPEAILNFIALMGWSSRQKSDFL--PMKELIDLFSIDKLTKSSSIVAFEKLY 346
Query: 508 EYNEAKLINTKETVNKSDEPNQTIPRYLIEEAS 606
N+ L VN+ DE + + LI++ S
Sbjct: 347 FLNKNYLRRAISDVNRLDELIELVQPRLIQKFS 379
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 166 VISNICKKQNNLKFVKLSA---TTSGINDVKEIVKIAKNDAQFKNQTILFMDEI 318
+++ C Q+N F+KL+A I D ++V+ A A+ K+ I+F+DE+
Sbjct: 234 LLARACAAQSNATFLKLAAPQLVQMFIGDGAKLVRDAFALAKEKSPAIIFIDEL 287
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.5 bits (58), Expect = 1.6
Identities = 27/87 (31%), Positives = 44/87 (50%)
Frame = +1
Query: 289 NQTILFMDEIHRFNKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVVVMDKL 468
++ I F DE+ R + + T L ++ + IG T S N ALL R RVV ++ L
Sbjct: 1275 SELITFSDELIRL--IHETTALAEADDDALIGIGKT----SHFKNAALLIRLRVVCVELL 1328
Query: 469 TTEDVMVILKKAIEYNEAKLINTKETV 549
+T ILK I++N + + +E +
Sbjct: 1329 ST----CILK--IDFNNPQHAHLREGI 1349
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 440 LLSRALLRLKEGFSVVAPIRVIVPFSTWGRKVS 342
++++ LL L+ G+SV AP+ + W R S
Sbjct: 10 MMAKCLLSLRSGYSVTAPVSKSMANVLWARYAS 42
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 190 QNNLKFVKLSATTSGINDVKEIVKIAKNDAQFKNQT 297
++N+K + LS+ S +N KE++++ ND Q+
Sbjct: 1852 ESNIKQIILSSPYSIVNRTKEVIEVVCNDRSGHRQS 1887
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 88 VASLCDESDKFQKY*YFFIPITSLANVISNICKKQNN 198
V + +E KFQ Y F PI + +++ + ++ N
Sbjct: 844 VTRILNEIKKFQSVGYMFNPINEVQELLNEVISRERN 880
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/52 (21%), Positives = 24/52 (46%)
Frame = +1
Query: 148 ITSLANVISNICKKQNNLKFVKLSATTSGINDVKEIVKIAKNDAQFKNQTIL 303
I ++ ++SN ++QN + K S +ND ++ A +++ L
Sbjct: 799 IANIGKIVSNFLQEQNESLYTKADILHSHLNDTNSNIRKANEIMNNRSEEFL 850
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 490 ILKKAIEYNEAKLINTKETVNKSDE 564
I+KKA+E+N + KE VN +E
Sbjct: 361 IIKKALEFNPTSVSLWKEAVNLEEE 385
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 6.5
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 415 SLNNALLSRCRVVVMDKLTTEDVMVILKKAIEYNEAKLI 531
S ++ALL RC VVV+D + +DV + K Y + +I
Sbjct: 2089 SPDSALL-RCSVVVVDVYSMDDVKAVEKILKSYPDVHVI 2126
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 335 SLLNLWISSMNKIVWFLNCASFFAILTISFTSLMPDVVADSFTNFKLFCF 186
S+ NL I F C S F + FT+++ DV+ SF K++ F
Sbjct: 797 SVNNLLQQYFTAIYKFEGCGSVFPFVVDPFTTILDDVL--SFEANKVYSF 844
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,404
Number of Sequences: 5004
Number of extensions: 50026
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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