Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e23
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 30 1.7
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 29 2.9
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 29 3.8
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300... 29 3.8
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 29 3.8
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567... 29 3.8
02_05_1126 - 34284733-34284810,34285151-34285291,34285424-342855... 27 8.9
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/85 (22%), Positives = 36/85 (42%)
Frame = +1
Query: 79 YAHVASLCDESDKFQKY*YFFIPITSLANVISNICKKQNNLKFVKLSATTSGINDVKEIV 258
Y H+ L + ++ + + +T N C K + L+ + L + GI DV ++
Sbjct: 559 YTHIMRLPERLWLLKELRHLDLSVTVALEDTLNNCSKLHKLRVLNLFRSHYGIRDVDDLN 618
Query: 259 KIAKNDAQFKNQTILFMDEIHRFNK 333
+ D F TI D + + N+
Sbjct: 619 LDSLRDLLFLGITIYSQDVLKKLNE 643
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Frame = +1
Query: 214 LSATTSGINDVKEIVKIAKNDAQFKNQTILFMDEIHRFNKL--------QQDTFLPHVEN 369
L A T +++E +K + + + ILF+DE+H + F P +
Sbjct: 350 LLAGTKYRGELEERLKNILEEIKQNGEIILFLDEVHTLVTAGSAEGAIDAANIFKPALAR 409
Query: 370 GTITLIGATTEN---PSFSLNNALLSRCRVVVMDKLTTEDVMVILK 498
G + IGATT N + AL R + V + + T ++ + ILK
Sbjct: 410 GELQCIGATTINEYRKHIEKDAALERRFQPVKIPESTVDETVGILK 455
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 361 VENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLT 471
VE+G+ +G + F L ALL RCR++V+D+ T
Sbjct: 1363 VEDGSNWSMG---QRQLFCLGRALLRRCRILVLDEAT 1396
>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
3001969-3002274,3002365-3002579,3003047-3003341,
3003487-3003651,3003745-3004341,3004855-3004941,
3005022-3005342,3006218-3008242
Length = 1474
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 361 VENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLT 471
VE+G+ +G + F L ALL RCR++V+D+ T
Sbjct: 1360 VEDGSNWSMG---QRQLFCLGRALLRRCRILVLDEAT 1393
>03_04_0140 +
17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 28.7 bits (61), Expect = 3.8
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Frame = +1
Query: 262 IAKNDAQFKNQTILFMDEIHRF-------NKLQQDTFL-PHVENGTITLIGATT---ENP 408
+ K QTILF+DEIH + L P + G + IGATT
Sbjct: 345 VLKEVTDSDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRK 404
Query: 409 SFSLNNALLSRCRVVVMDKLTTEDVMVILK 498
+ AL R + V +D+ + ED + IL+
Sbjct: 405 YIEKDPALERRFQQVYVDQPSVEDTISILR 434
>01_07_0291 +
42555233-42555444,42556515-42556550,42556652-42556796,
42556885-42556938,42557130-42557260,42557830-42558056,
42558670-42558846,42558928-42559076
Length = 376
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 358 HVENGTITLIGATTENPSFSLNNALLSRC 444
H+E G + + A T NP F+ + A RC
Sbjct: 238 HLEKGRVVIFAAGTGNPFFTTDTAAALRC 266
>02_05_1126 -
34284733-34284810,34285151-34285291,34285424-34285543,
34285787-34285874,34285962-34286080,34286437-34286628,
34286802-34286993,34287309-34287416,34287983-34288099,
34288214-34288315
Length = 418
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +1
Query: 166 VISNICKKQNNLKFVKLSA---TTSGINDVKEIVKIAKNDAQFKNQTILFMDEI 318
+++ C Q N F+KL+ I D ++V+ A A+ K+ I+F+DEI
Sbjct: 214 LMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEI 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,209
Number of Sequences: 37544
Number of extensions: 275526
Number of successful extensions: 582
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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