Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e23
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35) 81 5e-16
SB_17029| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38) 29 2.2
SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2) 28 6.9
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 6.9
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0) 28 6.9
SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42) 27 9.1
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31) 27 9.1
SB_30314| Best HMM Match : CBS (HMM E-Value=2.1) 27 9.1
>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
Length = 848
Score = 81.4 bits (192), Expect = 5e-16
Identities = 37/59 (62%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Frame = +1
Query: 169 ISNICKKQNNLKFVKLSATTSGINDVKEIVKIAKNDAQ-FKNQTILFMDEIHRFNKLQQ 342
++N +K +FV LSATTSGIND+KE+VK+AKN+ Q F+ +TILF+DEIHRFNK QQ
Sbjct: 474 VANNARKTTTTRFVTLSATTSGINDIKEVVKVAKNEQQMFRRKTILFVDEIHRFNKTQQ 532
>SB_17029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 412 FSLNNALLSRCRVVVMDKLTTEDVMVILKKAIEYNEAKL 528
F + +L+S C + + L +DV ++L +AI+Y E KL
Sbjct: 107 FYIVPSLVSMCSHFLEENLGPKDVFIVLPEAIKYEEVKL 145
>SB_49365| Best HMM Match : ABC_tran (HMM E-Value=3.5e-38)
Length = 283
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 361 VENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLTT 474
+E G + L + E FSL ALL + +++VMD+ TT
Sbjct: 183 IEEGGVNL--SVGERQLFSLARALLQKNKIIVMDEATT 218
>SB_16508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 492 NNHHIFSGQFVHDNNPASTK*SIIETERRIFSCGSNQSYCTILHMGQESVLLKF 331
NNH I +G V +NPA T +I E I Y I+H+ + +++
Sbjct: 375 NNHDITNGNKVDKSNPAGTLGDVISVE--IKDVRGTLVYPEIVHLDERQACVRY 426
>SB_8906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1116
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 235 INDVKEIVKIAKNDAQFKNQTILFMDEIHRFNKLQQDTFLPH-VENGTITLIGATTENPS 411
+ +++V + + + + TI MD+ +N L H +E G + L + E
Sbjct: 974 LQSTRQVVSVIQQNPTLLSGTIRMMDK-WGYN-------LEHRIEEGGVNL--SVGERQL 1023
Query: 412 FSLNNALLSRCRVVVMDKLT 471
FSL ALL + ++++MD++T
Sbjct: 1024 FSLARALLQKNKIIIMDEVT 1043
>SB_19686| Best HMM Match : SCAN (HMM E-Value=3.2)
Length = 609
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 313 EIHRFNKLQQDTFLPHVENGTITLIG 390
++HR K TFLP ENGT+ L G
Sbjct: 169 KVHR-TKTDPQTFLPSPENGTVLLPG 193
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 448 VVVMDKLTTEDVMVILKKAIEYNEAKLINTKETVNKSDEPNQ-----TIPRYLIEEASLQ 612
VV++D+ +TED+ + +KA E + + + + +P+Q T P+ LIE+ +Q
Sbjct: 562 VVMVDRSSTEDMDEVARKAKELEKQGITIIAIALGSTADPDQLGKIATSPKNLIEKPDVQ 621
>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
Length = 583
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 53 CSKFKHKWKNGSGMCRK 3
C KF +KNG+G+C K
Sbjct: 410 CKKFSEYYKNGTGLCTK 426
>SB_46433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 391 ATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKKAI 507
+T E L ALL RVV++D+ +DV I+++ +
Sbjct: 915 STREKQLLCLARALLQNNRVVIIDEAFDDDVSAIMEETV 953
>SB_53871| Best HMM Match : ABC_tran (HMM E-Value=1.49939e-42)
Length = 347
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 361 VENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLT 471
+E G + L + E FSL ALL + +++VMD+ T
Sbjct: 240 IEEGGVNL--SVGERQLFSLARALLQKNKIIVMDEAT 274
>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
Length = 1399
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +1
Query: 163 NVISNICKKQNNLKFVKLSATTSGINDVKEIV 258
+V SN+ KK+N K+ ++ +SG+ +V +++
Sbjct: 1073 DVFSNLLKKENKDKWEEVQQRSSGVTEVMQLL 1104
>SB_30314| Best HMM Match : CBS (HMM E-Value=2.1)
Length = 869
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 367 NGTITLIGATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKKAIEYNEAKLINTKET 546
NG +++ G + N S+N LLS R++ +++L + + ++ + + + N IN T
Sbjct: 561 NGLLSINGLLSINRLLSINR-LLSINRLLSINRLLSINRLLSINRLLSINRLLSINRLLT 619
Query: 547 VNK 555
+N+
Sbjct: 620 INR 622
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,662,106
Number of Sequences: 59808
Number of extensions: 333976
Number of successful extensions: 855
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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