Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e23
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p pro...    33   0.30 
AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown prot...    33   0.30 
AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA...    33   0.30 
X03734-1|CAA27371.1|  930|Drosophila melanogaster protein ( D. m...    28   8.6  

>BT003212-1|AAO24967.1|  527|Drosophila melanogaster RE18250p
           protein.
          Length = 527

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 224 VADSFTNFKLFCFLQILEMTFANDVMGIKKYQYFWNLSLSS 102
           V ++FT F L   + ++     + V GI+K Q+FW L+L S
Sbjct: 154 VYETFTVFMLMAIIVLVLTAVLSAVFGIEKLQFFWFLNLGS 194


>AF132157-1|AAD34745.1|  527|Drosophila melanogaster unknown
           protein.
          Length = 527

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 224 VADSFTNFKLFCFLQILEMTFANDVMGIKKYQYFWNLSLSS 102
           V ++FT F L   + ++     + V GI+K Q+FW L+L S
Sbjct: 154 VYETFTVFMLMAIIVLVLTAVLSAVFGIEKLQFFWFLNLGS 194


>AE014297-3631|AAF56340.1|  527|Drosophila melanogaster CG5807-PA
           protein.
          Length = 527

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 224 VADSFTNFKLFCFLQILEMTFANDVMGIKKYQYFWNLSLSS 102
           V ++FT F L   + ++     + V GI+K Q+FW L+L S
Sbjct: 154 VYETFTVFMLMAIIVLVLTAVLSAVFGIEKLQFFWFLNLGS 194


>X03734-1|CAA27371.1|  930|Drosophila melanogaster protein ( D.
            melanogaster retrotransposongypsy gene fragment for
            reverse transcriptase-like enzyme.).
          Length = 930

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 421  NNALLSRCRVVVMDKLTTEDVMVILKKAIEYNEAKLINTKE 543
            ++ L    R + +DK T++ V +IL+  IEYN+     T+E
Sbjct: 886  HSTLAEIARCLKLDKKTSDTVELILRATIEYNKTVHSVTRE 926


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,515,142
Number of Sequences: 53049
Number of extensions: 494118
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)