Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e23
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine re...    28   6.0  
AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine re...    28   6.0  
Z92829-15|CAB07343.2|  359|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z71258-13|CAN86573.1|  582|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z71258-6|CAA95779.1|  636|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 118 FQKY*YFFIPITSLANVISNICKKQNNLKFV-----KLSATTSGINDVKEIVK 261
           F+K   FF P  +++ +  +   K+  L+F+     +L+A+  G   ++EIVK
Sbjct: 461 FEKCVAFFFPPATVSKIFGSSISKRQYLQFIELDMKQLAASCDGAEKIEEIVK 513


>AC006730-6|AAX22282.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform b protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 299 IVWFLNCASFFAILTISFTSLMPDVVADSFTNFKLFCFL 183
           +VWF +C    + L  +FT  +    +D+  NF+ +C L
Sbjct: 11  LVWFYHCMGTISFLLNTFTIYLALFKSDTIDNFR-YCIL 48


>AC006730-5|AAF60478.4|  320|Caenorhabditis elegans Serpentine
           receptor, class i protein40, isoform a protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 299 IVWFLNCASFFAILTISFTSLMPDVVADSFTNFKLFCFL 183
           +VWF +C    + L  +FT  +    +D+  NF+ +C L
Sbjct: 11  LVWFYHCMGTISFLLNTFTIYLALFKSDTIDNFR-YCIL 48


>Z92829-15|CAB07343.2|  359|Caenorhabditis elegans Hypothetical
           protein F10A3.9 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -2

Query: 296 VWFLNCASFFAI-LTISFTSLMPDVVADSFTNFK-LFCFLQILEMTFA 159
           +WFL+ ++FFAI +  +   L+      S   +K L  ++ + E+T+A
Sbjct: 15  IWFLDVSAFFAISINFALIILILTKSPQSLGTYKYLMIYIALFELTYA 62


>Z81127-3|CAB03388.2|  310|Caenorhabditis elegans Hypothetical
           protein T22G5.3 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 406 PSFSLNNALLSRCRVVVMDK--LTTEDVMVILKKAIEYNEAKLINTKETVNKSD 561
           P F+  + L + C+ +V+DK  LT  D+   +KK ++  + KL + K  +   D
Sbjct: 220 PWFTRQDLLNTNCQNLVIDKTKLTNNDLNAYIKKWLDGADTKLESFKIEIEDPD 273


>Z71258-13|CAN86573.1|  582|Caenorhabditis elegans Hypothetical
           protein C01H6.7b protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 214 LSATTSGINDVKEIVKIAKNDAQFKNQTILFMDEIHRFNKLQQ 342
           L   T  +ND+++ V +   ++  +N    FM+E++  N  QQ
Sbjct: 506 LGIETGFLNDIRQQVLVPAVESNIENNIPEFMNEVNHMNVQQQ 548


>Z71258-6|CAA95779.1|  636|Caenorhabditis elegans Hypothetical
           protein C01H6.7 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 214 LSATTSGINDVKEIVKIAKNDAQFKNQTILFMDEIHRFNKLQQ 342
           L   T  +ND+++ V +   ++  +N    FM+E++  N  QQ
Sbjct: 506 LGIETGFLNDIRQQVLVPAVESNIENNIPEFMNEVNHMNVQQQ 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,903
Number of Sequences: 27780
Number of extensions: 276313
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)