Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e23
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...   130   5e-31
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    33   0.20 
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    29   3.2  
At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase fa...    29   3.2  
At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase fa...    29   3.2  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    28   4.2  
At4g32970.1 68417.m04690 expressed protein low similarity to SP|...    28   5.6  
At3g01670.1 68416.m00098 expressed protein                             28   5.6  
At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containi...    28   5.6  
At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to ...    27   7.4  
At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90) ...    27   9.8  
At1g80310.1 68414.m09402 expressed protein                             27   9.8  

>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score =  130 bits (315), Expect = 5e-31
 Identities = 65/132 (49%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
 Frame = +1

Query: 151 TSLANVISNICKKQNNLKFVKLSATTSGINDVKEIVKIAKN-DAQFKNQTILFMDEIHRF 327
           TS+A  + N  K  +  +FV LSA TSG+ DV++ V+ AK  + + + +T+LFMDE+HRF
Sbjct: 151 TSIAKSLINSSKDPSLYRFVSLSAVTSGVKDVRDAVESAKRLNLEGRKRTVLFMDEVHRF 210

Query: 328 NKLQQDTFLPHVENGTITLIGATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKKAI 507
           NK QQDTFLP +E+G+I  IGATTENPSF L   LLSRCRV+ ++ L    V  +L++A+
Sbjct: 211 NKSQQDTFLPVIEDGSILFIGATTENPSFHLITPLLSRCRVLTLNPLKPNHVETLLRRAV 270

Query: 508 EYNEAKLINTKE 543
           + +E  L N+ E
Sbjct: 271 DDSERGLPNSVE 282


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
 Frame = +1

Query: 220 ATTSGINDVKEIVK-----IAKNDAQFKNQTILFMDEIHRFNKLQQDTFLPHVENGTITL 384
           A   G + V+ ++K     + +N + +K   +  +DE H        +FL  +EN    +
Sbjct: 541 ANKKGADKVRYLLKNLPTILPRNSSMYK---VFVIDECHLLPSKTWLSFLKFLENPLQKV 597

Query: 385 IGATTENPSFSLNNALLSRCRVVVMDKLTTEDVMVILKK 501
           +         ++   + SRC+  + DKL   D++V LKK
Sbjct: 598 VFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKK 636


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
 Frame = +1

Query: 262 IAKNDAQFKNQTILFMDEIHRF-------NKLQQDTFL-PHVENGTITLIGATT---ENP 408
           + K     + Q ILF+DEIH           +     L P +  G +  IGATT      
Sbjct: 338 VLKEVTDSEGQIILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRK 397

Query: 409 SFSLNNALLSRCRVVVMDKLTTEDVMVILK 498
               + AL  R + V +D+ T ED + IL+
Sbjct: 398 YIEKDPALERRFQQVYVDQPTVEDTISILR 427


>At3g18680.2 68416.m02373 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 366

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 358 HVENGTITLIGATTENPSFSLNNALLSRC 444
           H+E G + +  A T NP F+ + A   RC
Sbjct: 213 HLEKGRVVIFAAGTGNPFFTTDTAAALRC 241


>At3g18680.1 68416.m02372 aspartate/glutamate/uridylate kinase
           family protein similar to UMP-kinase GB:CAB38122
           gi:4468612 from [Lactococcus lactis] ; contains Pfam
           profile PF00696: Amino acid kinase family
          Length = 339

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 358 HVENGTITLIGATTENPSFSLNNALLSRC 444
           H+E G + +  A T NP F+ + A   RC
Sbjct: 213 HLEKGRVVIFAAGTGNPFFTTDTAAALRC 241


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
 Frame = +1

Query: 184 KKQNNLKFVKLSATTSGINDVKEIVKIAKNDAQFKN-QTILFMDEIHRF-------NKLQ 339
           +K  +L    L A      D +E +K    +    N QTILF+DEIH           + 
Sbjct: 316 RKLISLDMGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGAGAMDGAMD 375

Query: 340 QDTFL-PHVENGTITLIGATT---ENPSFSLNNALLSRCRVVVMDKLTTEDVMVILK 498
               L P +  G +  IGATT          + AL  R + V+  + + ED + IL+
Sbjct: 376 ASNLLKPMLGRGELRCIGATTLTEYRKYIEKDPALERRFQQVLCVQPSVEDTISILR 432


>At4g32970.1 68417.m04690 expressed protein low similarity to
           SP|Q13061 Triadin {Homo sapiens}
          Length = 750

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 136 FFIPITSLANVISNICKKQNNLKFVKLSATTSGIND 243
           FF+P TS+  + S ICKK+ N+  +    T S +N+
Sbjct: 443 FFLPETSIETLKSFICKKKMNV-ILAYVGTISSMNE 477


>At3g01670.1 68416.m00098 expressed protein
          Length = 822

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 384 QSYCTILHMGQESVLLKFVKPVDFIH 307
           Q++ TI+H+     LL+ ++P+DF++
Sbjct: 417 QTFTTIIHVDVVPPLLRLLRPIDFLY 442


>At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 617

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 478 DVMVILKKAIEYNEAKLINTKETVNKSDEPNQTIPR 585
           D + +LKK I  N+ + I  +  ++  ++PN  IP+
Sbjct: 35  DFLFLLKKCISVNQLRQIQAQMLLHSVEKPNFLIPK 70


>At1g64280.1 68414.m07284 regulatory protein (NPR1) identical to
           regulatory protein NPR1 (nonexpresser of PR genes 1,
           NPR1; noninducible immunity 1, Nim1; salicylic acid
           insensitive 1, Sai1) [Arabidopsis thaliana]
           SWISS-PROT:P93002
          Length = 593

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 430 LLSRCRVVVMDKLTTEDVMVILKKAIEYNEA--KLIN-TKETVNKSDEPNQTIPRYLIEE 600
           L  R  + V+DK+  ED +VILK A    +A  KL++  KE + KS+    ++ + L EE
Sbjct: 185 LYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEKSLPEE 244


>At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90)
           (CPD) identical to Cytochrome P450 90A1 (SP:Q42569)
           [Arabidopsis thaliana]
          Length = 472

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -1

Query: 483 HIFSGQFVHDNNPASTK*SIIETERRIFSCGSNQSYCTILHMGQESVLL 337
           H+F    +   +P + +  +++ E ++F C    S C +L  G+ S+LL
Sbjct: 74  HLFGEPTIFSADPETNR-FVLQNEGKLFECSYPASICNLL--GKHSLLL 119


>At1g80310.1 68414.m09402 expressed protein
          Length = 464

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +1

Query: 142 IPITSLANVISNICKKQNNLKFVKLSATTSGIN 240
           IP++ L +VI+ +CK  N+L   +LSATT  I+
Sbjct: 281 IPLSVLNSVIA-VCKLSNDLFDKELSATTVSIS 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,704,057
Number of Sequences: 28952
Number of extensions: 247907
Number of successful extensions: 570
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)