Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e22
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    33   0.19 
At3g06435.1 68416.m00743 Expressed protein                             30   1.3  
At1g11430.1 68414.m01313 plastid developmental protein DAG, puta...    30   1.3  
At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family p...    29   3.1  
At4g09500.2 68417.m01562 glycosyltransferase family protein cont...    28   5.4  
At4g09500.1 68417.m01561 glycosyltransferase family protein cont...    28   5.4  
At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase / ...    28   5.4  
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t...    28   7.1  
At2g22930.1 68415.m02723 glycosyltransferase family protein cont...    28   7.1  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   7.1  
At3g62550.1 68416.m07027 universal stress protein (USP) family p...    27   9.4  
At3g29630.1 68416.m03726 glycosyltransferase family protein cont...    27   9.4  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    27   9.4  
At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
           profiles PF01535: PPR repeat, PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif; several hypothetical proteins - Arabidopsis
           thaliana
          Length = 1302

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +1

Query: 370 LGLIEMFKDQFDNINVRNLIANNQTFDLVVVEAFAD 477
           LGLIE  ++ FD ++VR ++ ++ ++ L+V+  F D
Sbjct: 796 LGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRD 831


>At3g06435.1 68416.m00743 Expressed protein
          Length = 200

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 7   TKLP--VQLFGLKQKMTILCW--LALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYI 165
           TK+P  V++FG+   +T   W  +A L    AV AVN L +    +Y    V  +Y+
Sbjct: 15  TKIPQRVEVFGVNDPVTRFGWTIMAFLCVFGAVGAVNALEIQMDVSYLVMFVVAIYV 71


>At1g11430.1 68414.m01313 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 232

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 106 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
           I+  FP  PA S   +   Y+  LA    ++   K  ++A+ST TY G    ++ + S K
Sbjct: 92  IVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEK 151


>At2g24450.1 68415.m02922 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 280

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 31  GLKQKMTILCWLALLSTLTAVNAVNILAV---FPTPAYSHHIVYKVYIEALAEKCHNVTV 201
           GLK   ++LC   LL+  + V+AVNI  V   +P  +    ++ K  +  +  K   +TV
Sbjct: 2   GLKVSSSLLCLTILLAVSSIVSAVNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITV 61

Query: 202 V 204
           +
Sbjct: 62  L 62


>At4g09500.2 68417.m01562 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 442

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
           +FP  A+ H I +      LAEK H VT + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41


>At4g09500.1 68417.m01561 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 417

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
           +FP  A+ H I +      LAEK H VT + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPK 41


>At2g23410.1 68415.m02795 dehydrodolichyl diphosphate synthase /
           DEDOL-PP synthase (DPS) identical to dehydrodolichyl
           diphosphate synthase [Arabidopsis thaliana] GI:7960765
          Length = 303

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +1

Query: 124 TPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVT 303
           T +  H    K  I+ +AE C  + V     FA+ST+ +  +  E+++ MS+ Q+ +  +
Sbjct: 91  TTSQGHEAGAKRLID-IAELCFELGVHTVSAFAFSTENWGRDKIEIDNLMSLIQHYRNKS 149

Query: 304 NSAMFRKRGV 333
           N   F +  V
Sbjct: 150 NIKFFHRSEV 159


>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
           enhancer of zeste-like protein 1(EZA1) (GI:4185507)
           [Arabidopsis thaliana]; similar to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 856

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 622 RNCCAKC*DGERGAAPRR 569
           RNC   C DG  G APRR
Sbjct: 674 RNCWVSCGDGSLGEAPRR 691


>At2g22930.1 68415.m02723 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 442

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
           +FP  A+ H I +      LAEK H +T + PK
Sbjct: 9   MFPWFAFGHMIPFLHLANKLAEKGHQITFLLPK 41


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 170 PLPKNVTTLRSSSPNCLRI-RPKLIA 244
           PLPK VTTL+ SS   LR   PK+++
Sbjct: 393 PLPKIVTTLQKSSEGLLRYDTPKIVS 418


>At3g62550.1 68416.m07027 universal stress protein (USP) family
           protein similar to ER6 protein [Lycopersicon esculentum]
           GI:5669654; contains Pfam profile PF00582: universal
           stress protein family
          Length = 162

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 202 VKPKLFAYSTKTYCGNITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDT 351
           VKP L  YS+    G I   +   ++K+Y+  +  S M R R V  D ++
Sbjct: 44  VKPPLPVYSSLDAAGFIVTGDPVAALKKYEYELVESVMARSRTVYQDYES 93


>At3g29630.1 68416.m03726 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 448

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 115 VFPTPAYSHHIVYKVYIEALAEKCHNVTVVKPK 213
           ++P   + H I Y      LAEK H VT + PK
Sbjct: 9   LYPWFGFGHMIPYLHLANKLAEKGHRVTFLAPK 41


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 559 QSFPPNRSQARFGLRAQDRTGGQTPTHNRQTLPRQLNQTS 440
           QS PPN+S    G   Q +T  Q+P+  R   P Q    S
Sbjct: 733 QSQPPNQSIGNGGDDFQTQTQSQSPSQTRAQSPSQAQAQS 772


>At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 715

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/80 (22%), Positives = 30/80 (37%)
 Frame = +1

Query: 247 NITEVNSDMSVKQYKKLVTNSAMFRKRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNL 426
           N   V++D+   ++   +          +   T  V A    G IEM +  FD I  +N+
Sbjct: 434 NACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNI 493

Query: 427 IANNQTFDLVVVEAFADYAL 486
           I+         +    D AL
Sbjct: 494 ISWTVIISAYAINGLPDKAL 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,041,798
Number of Sequences: 28952
Number of extensions: 342649
Number of successful extensions: 855
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)