Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e19
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like ...   138   1e-33
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   1.7  
AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical ...    27   3.0  
U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical pr...    26   6.9  
Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical pr...    26   6.9  
U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical pr...    26   6.9  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    26   6.9  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    26   6.9  
AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical ...    26   6.9  
U53339-4|AAA96200.1|  298|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U88173-3|AAK21382.1|   73|Caenorhabditis elegans Ubiquitin-like
           family protein 5 protein.
          Length = 73

 Score =  138 bits (334), Expect = 1e-33
 Identities = 58/73 (79%), Positives = 67/73 (91%)
 Frame = +1

Query: 112 MLEVTCNDRLGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADY 291
           M+E+T NDRLGKKVR+KCNP DT+GDLKKLIAAQTGTR++KIVLKKWYT++KDHI L DY
Sbjct: 1   MIEITVNDRLGKKVRIKCNPSDTIGDLKKLIAAQTGTRWEKIVLKKWYTIYKDHITLMDY 60

Query: 292 EIHDGMNLELYYQ 330
           EIH+G N ELYYQ
Sbjct: 61  EIHEGFNFELYYQ 73


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/63 (26%), Positives = 36/63 (57%)
 Frame = -3

Query: 260 TVYHFLSTILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSILLSNQLSVLL 81
           T Y+F  ++ S+ V    A+NF   PTV   + +   +  + ++HV+ ++L   + S++L
Sbjct: 87  TSYNFYPSLASFSVGYATALNF---PTV---VQICILYTINDAVHVSITLLFEIRSSLIL 140

Query: 80  RNK 72
           +N+
Sbjct: 141 KNR 143


>AF003130-1|AAB54124.2|  423|Caenorhabditis elegans Hypothetical
           protein F55A12.6 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -1

Query: 235 FCRI*CQFVRLLTSLNHPRYRQGCI*LEPSYRVDHCMLLQAFCSQISSQFY*EIKYINSN 56
           +CR+  QFV  + S   PRY   C    P+Y+ + C  + A      S F  + K   ++
Sbjct: 195 YCRV-AQFVDYVGST--PRYYCDCPPYAPNYQWNQCSPMSARALSPMSVFSHKPKLSRNS 251

Query: 55  FLFVLVIL 32
           F F L ++
Sbjct: 252 FFFQLNLM 259


>U80452-4|AAB37860.1|  226|Caenorhabditis elegans Hypothetical
           protein C16C8.4 protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 139 LGKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLE 318
           LG     K + +DTV D+K  I  +         L       +DH  + DY I     + 
Sbjct: 161 LGVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTIT 220

Query: 319 LYYQ 330
           +Y++
Sbjct: 221 MYFR 224


>U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical
           protein C16C8.11 protein.
          Length = 214

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 142 GKKVRVKCNPDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYE 294
           G+   +  N  ++V  LK  I  QTG    K  L+       D  KLADY+
Sbjct: 152 GRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADYK 202


>Z68338-9|CAA92762.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 161 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 72
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z68338-8|CAA92761.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 161 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 72
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z54218-6|CAA90960.2| 2923|Caenorhabditis elegans Hypothetical
           protein T24B8.7b protein.
          Length = 2923

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 161 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 72
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>Z54218-5|CAA90959.2| 2920|Caenorhabditis elegans Hypothetical
           protein T24B8.7a protein.
          Length = 2920

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 161 LTRTFLPSRSLHVTSSILLSNQLSVLLRNK 72
           L RTF P RS H   ++   N+L   LR +
Sbjct: 690 LKRTFTPKRSTHGDETLSRVNELKASLRER 719


>U80847-4|AAB37986.1|  112|Caenorhabditis elegans Hypothetical
           protein C17H11.5 protein.
          Length = 112

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 169 PDDTVGDLKKLIAAQTGTRYDKIVLKKWYTVFKDHIKLADYEIHDGMNLELY 324
           P++  G + +   A    RYD + +K W       I +A  +++D M  E Y
Sbjct: 26  PENDDGAIIEFSVAMETCRYDYMTIKYWLDY--QRISIAAMKVYDRMKREKY 75


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -3

Query: 230 SYLVPVCAAINFFKSPTVSSGLHLTRTFLP-SRSLHVTSSILLSNQL 93
           ++++P      +F S T+S  LHL+ +F+P + S   TSS  +++ L
Sbjct: 844 AFVLPTHRGDYYFDSATLSQNLHLS-SFVPMTTSTTTTSSATMTSSL 889


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 291 IVCKFNMILEYCVPFLEYYFVVSSASLCGY*LL*ITHGIVRVAF 160
           ++C FN I  Y   ++++++   +  L G       HG V + +
Sbjct: 255 LICSFNAIAAYIYVYMQFFYSPPAVVLVGQLAWQCAHGSVCIVY 298


>AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical
           protein Y55F3C.10 protein.
          Length = 351

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -2

Query: 291 IVCKFNMILEYCVPFLEYYFVVSSASLCGY*LL*ITHGIVRVAF 160
           ++C FN I  Y   ++++++   +  L G       HG V + +
Sbjct: 251 LICSFNAIAAYIYVYMQFFYSPPAVVLIGQLAWQCAHGSVCIVY 294


>U53339-4|AAA96200.1|  298|Caenorhabditis elegans Hypothetical
           protein F58A6.5 protein.
          Length = 298

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 263 NTVYHFLSTILSYLVPVCAAINFFKSPTVSSGLHLTRTFLPSRSLHVTSSI 111
           N VYHF  T    +      +     P  SSG ++++TF  +  L + +SI
Sbjct: 64  NDVYHFAQTFKEDVNWFGNLMMNMSPPEKSSGFNISKTFANATFLLIVASI 114


>AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical
           protein W08F4.3 protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 155 RTFLP-SRSLHVTSSILLSNQLSVL 84
           R FLP S ++HVTS I L   LSV+
Sbjct: 171 RGFLPLSSTVHVTSGISLGEPLSVI 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,734,152
Number of Sequences: 27780
Number of extensions: 120989
Number of successful extensions: 380
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)