Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e16
(769 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05675.2 68416.m00633 expressed protein 31 1.1
At3g05675.1 68416.m00632 expressed protein 31 1.1
At1g21450.1 68414.m02682 scarecrow-like transcription factor 1 (... 30 1.5
At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger) fa... 30 2.0
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 29 3.4
At4g02425.1 68417.m00328 expressed protein 28 6.0
At3g09140.1 68416.m01075 expressed protein contains Pfam profile... 28 7.9
At2g03180.1 68415.m00271 hypothetical protein 28 7.9
>At3g05675.2 68416.m00633 expressed protein
Length = 441
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = +1
Query: 463 QCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTS 642
Q E DR SD R+ EGR W+ + + + +FA +K C + S
Sbjct: 7 QAEASYTFGDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDS 66
Query: 643 KMYSRLECHDDTDECQVYIL 702
+ + C + + + +L
Sbjct: 67 RYCVEVICQESDYDHHINLL 86
>At3g05675.1 68416.m00632 expressed protein
Length = 441
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/80 (22%), Positives = 32/80 (40%)
Frame = +1
Query: 463 QCEVGEELIDRWGSDSEECFRDNEGRGQWVKGKELVKRQNNNHFAYHTCNKSWRCGVSTS 642
Q E DR SD R+ EGR W+ + + + +FA +K C + S
Sbjct: 7 QAEASYTFGDRSSSDIVVRLRNEEGRDDWIYCHSKILSEKSQYFADRLSDKWPTCKILDS 66
Query: 643 KMYSRLECHDDTDECQVYIL 702
+ + C + + + +L
Sbjct: 67 RYCVEVICQESDYDHHINLL 86
>At1g21450.1 68414.m02682 scarecrow-like transcription factor 1
(SCL1) identical to scarecrow-like 1 GB:AAF21043
GI:6644390 from [Arabidopsis thaliana]
Length = 593
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +1
Query: 292 ITIVETDYNENVIIGYKGYYQAYAYNGGSLDPNTRVEESMKTLTVGKEDLLMWGIRQQCE 471
+T+VE D N N + + +AY Y + V ES+ +T+ +E + +QC
Sbjct: 458 VTVVEQDVNTNTSPFFPRFIEAYEY-------YSAVFESL-DMTLPRESQERMNVERQC- 508
Query: 472 VGEELIDRWGSDSEECFRDNEGRGQW 549
+ ++++ + EE E G+W
Sbjct: 509 LARDIVNIVACEGEERIERYEAAGKW 534
>At3g58720.1 68416.m06545 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 238
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 354 LVVPLVANNHVFVVVRLHD---GDFHVLLQRFLGRGNVQ 247
+ +PL N + V++R+HD G+F + L+ LG G +Q
Sbjct: 1 MAIPLFQINPIIVMIRIHDRRVGEFLLSLRGMLGLGVIQ 39
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 628 RIATICCTCGTQSDCY--SAVSPTLCL*PTGRGLRCRENTLRCH 503
++ T C CG+QSD Y S TLCL GR + +N +CH
Sbjct: 6 QLNTSCVGCGSQSDLYGSSCRHMTLCL-KCGRTM--AQNKSKCH 46
>At4g02425.1 68417.m00328 expressed protein
Length = 262
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 524 RKHSSLSLPQRSINSSPTSHCCLI-PHMSKSSLPTVSVFMDSSTRVLGSS 378
R+ +S S+ RS + S T CC I H + S LP +V DSS + G +
Sbjct: 100 RRRNSRSVSGRSSDRSGTRRCCSIGAHGTCSDLP-FAVGTDSSGELFGEA 148
>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
PF05056: Protein of unknown function (DUF674);
expression supported by MPSS
Length = 473
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 614 LLHVWYAK*L--LFCRFTNSLPLTHWPRPSLSRKHSSLSLPQRSINSSPT 471
LLHV ++ L L C FT+ LPLT + +K SSL + + I SPT
Sbjct: 220 LLHVGVSEVLTLLECFFTSDLPLT----DTFLKKQSSLQMIRSRIPLSPT 265
>At2g03180.1 68415.m00271 hypothetical protein
Length = 120
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 483 LFAHLALLPDTPHEQIFFAHSQRFHGFFDACVGIQRASVVRIR 355
+F A + + +I FAH R H F D V I +S RI+
Sbjct: 3 IFKEFAKIKKSVEAKIGFAHKDRLHKFLDHHVVIDGSSEQRIQ 45
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,135,643
Number of Sequences: 28952
Number of extensions: 335016
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -