Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e13
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.033
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.17
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 30 0.40
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.2
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 27 2.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 2.8
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 3.7
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 27 3.7
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 25 8.6
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.033
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 285 HGHRNYFNGFLNRPPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQ 446
HG R++ +G H P+ T P P YP P +S GY P++PQ
Sbjct: 571 HGERHFDSG---NDWHGNPSTVPPPTNPYNPGYP-YMDPNYSSGYVSQPPWQPQ 620
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = +3
Query: 291 HRNYFNGFLNRPPHS--QPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQHPS 464
H Y +N PP P +YPS ++ Y N + P P H +
Sbjct: 103 HNGYAPKSMNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTYYPNMYVSANTFIPMPYAHYT 162
Query: 465 D---YVKPVHESN 494
D + KPV+ N
Sbjct: 163 DNMYHAKPVNRPN 175
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 29.9 bits (64), Expect = 0.40
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +3
Query: 306 NGFLNRPPHSQPTISSVTTRPQKPMYPSTRPPFFSGGYFGNNPYRPQPIQHP-----SDY 470
+G N+PP S+ + TT P +Y T+ P S F NP P + P + Y
Sbjct: 49 SGAFNKPPLSRNS----TTNPLNLLYTQTQQPARSTTPFLLNPVGSSPGKLPVPSRNNSY 104
Query: 471 VKPVHESNSQQFQEIYIPN 527
++ ESNS F I N
Sbjct: 105 LQGTAESNSGNFANNSISN 123
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 303 FNGFLNRPPHSQPTISSVTTRPQKPMYPST 392
FN ++NRP P++S++ P PST
Sbjct: 363 FNDYVNRPTSVMPSLSNMIVSPDLDSSPST 392
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 288 GHRNYFNGFLNRPPHSQPTISSVT 359
G+ Y +GFL+ P H PT +S +
Sbjct: 43 GYAVYHHGFLSSPSHKHPTTASAS 66
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +2
Query: 467 LCKTCPRKQ*PTISRN----LYSKYCRWALESCGWRFASQAYSKTDTVRCNFVQN 619
+ K C Q T N L K + ++ WR +A+ K + RCNF+ +
Sbjct: 579 IIKKCQESQIQTGKNNCSFQLVKKRIKSTKKAPSWRSIIKAFKKRENTRCNFLSS 633
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 147 SNSNSPFNDLQENPQEDD--ANDCGEIEDYDEND 242
S S D+ E +EDD ND G+ ED +END
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENEND 274
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 105 RTFGAFYDLLAPNYSNSNSP 164
RTFG F D+L N S+ N+P
Sbjct: 252 RTFGNFADILVINVSSPNTP 271
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -1
Query: 680 PQSRVICRWCRFRVISIIARSSGRSYIVLCRFSSRLGWRNAN 555
P + WC+ + I +I SSG + F LG A+
Sbjct: 81 PSFKPFYEWCKSQDIRVIILSSGMEPFIRALFEQYLGKEEAS 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,007
Number of Sequences: 5004
Number of extensions: 61251
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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