Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e11
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0301 - 3319562-3320008 33 0.27
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 33 0.27
10_08_0229 - 16016818-16017387 31 0.63
11_01_0387 + 2922208-2922704,2922956-2923088,2923487-2923549,292... 30 1.5
10_08_0227 - 16004868-16005449 30 1.9
08_02_1292 + 25943074-25943643 29 3.3
12_01_0842 - 7877286-7877628,7877848-7877917,7877984-7878113 29 4.4
09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385 28 5.9
04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261 28 5.9
01_01_1071 - 8446761-8447440,8449334-8450489 28 5.9
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466... 28 7.7
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 7.7
03_06_0116 + 31773295-31773603,31773800-31773946,31774080-317741... 28 7.7
>10_01_0301 - 3319562-3320008
Length = 148
Score = 32.7 bits (71), Expect = 0.27
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 213 CAPPATARLR--PRGRSRTPPRLRIGIRVWWFAWWRPSRTAW 94
C P A RL P R P LR R+WW W R SRTAW
Sbjct: 49 CYPSALLRLSLSPPPSPRHPRALR---RIWW--WCRSSRTAW 85
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 462 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAMLA-DEYAESA 638
GGG G +V A + + Y T A +A+P+ + + SYG + DE S
Sbjct: 388 GGGGGRHVAVTATPARSVVSSYSTATATTAARPRATRPAKVASSYGGGGSIRDDESLTSC 447
Query: 639 AEGGGSLPSF 668
GG+LP++
Sbjct: 448 PAFGGALPNY 457
>10_08_0229 - 16016818-16017387
Length = 189
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +3
Query: 459 GGGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAMLADEYAESA 638
GGGG G Y+ S + ++ + + P +++ G G AD Y S+
Sbjct: 70 GGGGGGNGGGRYSGSGHGSGSGRGSSSSQVGPDPYRGSSNAGGTGGGEGGGRADGYYGSS 129
Query: 639 AEGGGS 656
G GS
Sbjct: 130 GYGSGS 135
>11_01_0387 +
2922208-2922704,2922956-2923088,2923487-2923549,
2923564-2923680,2925040-2925399
Length = 389
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 456 QGGGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYGSNAMLADEYAES 635
QGGGG G A S + A + +G+ + + L+ P Y AM AD AE
Sbjct: 102 QGGGGGGGAGS----GSSGGGAGHKRSGS-MDGESSLFEGESAPPDYAKKAMPADRLAEL 156
Query: 636 A 638
A
Sbjct: 157 A 157
>10_08_0227 - 16004868-16005449
Length = 193
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +3
Query: 462 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQLWTASGGSPSYG 599
GGGNG+ SSV N+ PY A + SGGS S G
Sbjct: 137 GGGNGSGSSVANNGTPNTPPPYANANASGNGNGNGGGQSGGSGSGG 182
>08_02_1292 + 25943074-25943643
Length = 189
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +3
Query: 210 RSYQELRPAHARDM-QPYAH-LDDALFKP----PTPGAASTDGVYLRRSPELXPSP 359
R L P H R + + YAH + LF+P P P AA+ V+ +P + P+P
Sbjct: 87 RRRHALTPGHVRAIAERYAHDVGSVLFRPLPPPPPPVAAAAVPVFAAPAPPMAPAP 142
>12_01_0842 - 7877286-7877628,7877848-7877917,7877984-7878113
Length = 180
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 474 GAASSVYTRCAFNSAAPYFTN---GADLSAQPQLWTASGGSPSYGSNAMLADEYAESAA 641
G AS V A +AAP + G + QP+ G PSYGSN + + + + AA
Sbjct: 124 GIASYVALEAA--AAAPCWEERRLGVAAAGQPEQGRRGHGCPSYGSNKTMLELFEDEAA 180
>09_05_0009 - 20048736-20049423,20049504-20049743,20049832-20050385
Length = 493
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 183 PRGRSRTPPRLRIGIRVWWFAWWRPSRTA 97
PRG+ PP + IR WF W + TA
Sbjct: 272 PRGKDWVPPECDVSIRPGWF--WHKNETA 298
>04_04_1174 - 31473859-31474269,31476011-31476420,31477102-31477261
Length = 326
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 204 PATARLRPRGRSRTPPRLRIGIRVWWF 124
PA AR R GR R R+G W+F
Sbjct: 64 PARARARAAGRRRREDAARVGATEWYF 90
>01_01_1071 - 8446761-8447440,8449334-8450489
Length = 611
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 462 GGGNGAASSVYTRCAFNSAAPYFTNGADLSAQPQL-WTASGGSPSYGSNAMLADEYAESA 638
GG GAA++V++ C+F S A L Q TA GG G ++A
Sbjct: 18 GGNGGAAAAVFSGCSFESQEEAEAFEAALLQQACFNVTAFGGGGGGGGGEGGCVSRLDTA 77
Query: 639 AEGGGSLP 662
G GS P
Sbjct: 78 RGGAGSGP 85
>09_04_0574 +
18645363-18645870,18645995-18646491,18646631-18646696,
18646921-18646989,18647401-18647466
Length = 401
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 459 GGGGNGAASSVYTRCAFNSA-APYFTNGADLSAQPQLWTASGGSPSYGSN 605
GGGG G + + +F+S + +++ ++ + GGSP GSN
Sbjct: 180 GGGGGGGDPRLKGQLSFSSRQGSVMSQISEMGSEDEELAGGGGSPEAGSN 229
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 213 SYQELRPAHARDMQPYA-HLDDALFKPPTPGAASTDG 320
S Q+ R AHA A L D L PP PG++S G
Sbjct: 342 SEQQTRYAHALSQSSLAAKLGDELLFPPLPGSSSNRG 378
>03_06_0116 +
31773295-31773603,31773800-31773946,31774080-31774158,
31777558-31778180
Length = 385
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/77 (29%), Positives = 30/77 (38%)
Frame = +3
Query: 333 RSPELXPSPERRDDYRPPAPLHYEXXXXXXXXXXXXXXXLEQGGGGNGAASSVYTRCAFN 512
R PEL P PE D PP PL Y+ GGG GAA++ +
Sbjct: 18 RLPELIP-PENPDRISPP-PLLYQLLAGSASSARHGHG--HHHGGGGGAAAAAVQGLQVS 73
Query: 513 SAAPYFTNGADLSAQPQ 563
A A++ + PQ
Sbjct: 74 PAGAEAAMKAEIMSHPQ 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,825
Number of Sequences: 37544
Number of extensions: 262762
Number of successful extensions: 1576
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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