Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e11
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       29   2.6  
SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)                 29   2.6  
SB_47221| Best HMM Match : Pox_A32 (HMM E-Value=0.04)                  29   2.6  

>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 255 PYAHLDDALFKPPTPGAASTDGVYLRRSPELXPSPERRDDYR---PPAPLH 398
           P    DD   + P P    T+    RR P L P+P+R  D +   PP P H
Sbjct: 538 PKPQFDDTPTRAPPPPDMQTNPDTERRPPPLPPAPKRALDLKPNLPPVPTH 588


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 210 RSYQELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELXPSPER 365
           RS+ E R    R  QPY ++   L +P + G+        R  PE  P P R
Sbjct: 29  RSFTEPRTPTGRSRQPYVNIHGQLVRPGSQGSDLN-----RNEPEPEPEPRR 75


>SB_47384| Best HMM Match : Pox_A32 (HMM E-Value=0.029)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 471 NGAASSV-YTRCAFNSAAPYFTNGADLSAQPQLWTASG-GSPSYGSNAMLADEYAESAAE 644
           N AA  V YT    +  A     GA+LS +    +     +  + +  M+ DE  ES  E
Sbjct: 139 NIAALEVFYTPSKADMKAILHDYGAELSEEKMKESMKALKTKKFLNRTMMCDECFESFLE 198

Query: 645 GGGSLPS 665
           GGGSLP+
Sbjct: 199 GGGSLPT 205


>SB_47221| Best HMM Match : Pox_A32 (HMM E-Value=0.04)
          Length = 263

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 492 YTRCAFNSAAPYFTNGADLSAQPQL-WTASGGSPSYGSNAMLADEYAESAAEGGGS-LPS 665
           YT    +  A     GA+LS +    +T +  +  + +  M++DEY ES  EGG + LP+
Sbjct: 147 YTPSKADMKAILHDYGAELSEEKMKEYTKALKTKKFSNRTMMSDEYFESLLEGGAADLPA 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,480
Number of Sequences: 59808
Number of extensions: 200332
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)