Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e11
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical ...    28   5.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin con...    27   9.1  

>AL161712-8|CAC70133.1|  340|Caenorhabditis elegans Hypothetical
           protein Y66D12A.11 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 222 ELRPAHARDMQPYAHLDDALFKPPTPGAASTDGVYLRRSPELXPSPERRDD 374
           EL P    ++ P +  D  + KPP     S     +   P L P PE R D
Sbjct: 197 ELEPEGV-EVTPESFPDLQIMKPPPVSPPSNISEQIHHQPPLVPQPESRPD 246


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 330 RRSPELXPSPERRDDYRPPAP 392
           RR P   PSP+RR    PP+P
Sbjct: 158 RRPPMTPPSPQRRPPRTPPSP 178


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 288 PPTPGAASTDGVYLRRSPELXPSPERRDDYRPPA 389
           P TPG A   G    +     P P+R+DD  PP+
Sbjct: 255 PGTPGQAGKPGAP-GKDANYCPCPQRQDDRTPPS 287


>AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein26 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 207 PPATARLRPRGRSRTPPRLRIGIRVWWFAWWRPSRT 100
           PPA   L P GR +T  RL + I  +    W P+ T
Sbjct: 71  PPAILMLTPNGRFQTNTRLCLSISDYHPDTWNPAWT 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,499
Number of Sequences: 27780
Number of extensions: 148652
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)