Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e08
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)                   29   1.0  
SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                27   5.4  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   27   5.4  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  

>SB_45836| Best HMM Match : EGF (HMM E-Value=6.7e-21)
          Length = 1332

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 141  RLWRSEHFSLLGGKKGRFPHRTELKARIGEDSSRT*CSGKIIL 269
            +LW    F + G KKG FP+  ++  R+ +   +  CS  +IL
Sbjct: 1080 QLWLLSRFKINGTKKGCFPYNKQIFWRLNKVKKKE-CSHTVIL 1121


>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 241 LLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRH 137
           L L+  + A+  V W +L F PP++ +  D HN++
Sbjct: 128 LQLAGAVIAVLFVAWLSLKFLPPTR-RVGDYHNKY 161


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -2

Query: 286 KYYFANKIIFPL---HYVLLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRH 137
           +Y     ++FP+   H V+ +S P    SS    +    PPS  +   R +RH
Sbjct: 316 RYLHVTALVFPITIVHLVIFMSPPSSFQSSPSVSSSSLSPPSSFQSYHRPSRH 368


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 29  HCRFSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMAVV 148
           H  FSL + NCH+    N++ +  +    + + +  MA++
Sbjct: 753 HRHFSLSRCNCHYENNNNNSIRDVDNDDDDVMMMMVMAMI 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,421,373
Number of Sequences: 59808
Number of extensions: 204771
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)