Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e08
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59730.1 68416.m06664 receptor lectin kinase, putative simila...    29   0.83 
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr...    29   1.1  
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ...    28   1.9  
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin...    28   1.9  
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ...    27   2.5  
At2g16960.1 68415.m01954 importin beta-2 subunit family protein ...    27   4.4  
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr...    26   7.7  
At5g15360.1 68418.m01798 hypothetical protein                          26   7.7  
At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi...    26   7.7  
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac...    26   7.7  
At1g66880.1 68414.m07601 serine/threonine protein kinase family ...    26   7.7  
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein...    26   7.7  
At1g30500.2 68414.m03729 CCAAT-binding transcription factor (CBF...    26   7.7  
At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF...    26   7.7  

>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 253 LHY-VLLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRHRA*CYSIS 113
           LHY VL+ + P      + +G +P  PP  +K SDR     A C +++
Sbjct: 239 LHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286


>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 625

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 95  GSNTSAANAIALGAMAVVAVGTFLFTWWKERK 190
           G   + A  +A GA  + A     F WW+ RK
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266


>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
           ribosomal protein S27A (RPS27aC) identical to GI:166933,
           GI:166934
          Length = 157

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 306 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 175
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKIDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
           2 (SERK2) nearly identical to somatic embryogenesis
           receptor-like kinase 2 [Arabidopsis thaliana]
           GI:14573457; contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain; identical to
           cDNA somatic embryogenesis receptor-like kinase 2
           (SERK2) GI:14573456
          Length = 628

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 113 ANAIALGAMAVVAVGTFLFTWWKERK 190
           A  +A GA  + A     F WW+ RK
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269


>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
           ribosomal protein S27A (RPS27aB) identical to GI:166936
          Length = 157

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 306 KHKRVHVSIILRTKLFFRCTMFCYYLRRFAP*APCGGGTFLSFH 175
           KHK+V ++++   K+     +    LR+  P A CG GTF++ H
Sbjct: 94  KHKKVKLAVLQFYKVDGSGKV--QRLRKECPNATCGAGTFMASH 135


>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
           contains weak hit to Pfam PF02985: HEAT repeat (4
           copies); contains weak hit to Pfam PF03130: PBS lyase
           HEAT-like repeat (2 copies); supported by tandem
           duplication of importin beta family protein
           (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
           Importin beta-2 subunit (Karyopherin beta-2 subunit)
           (Transportin) (M9 region interaction protein) (MIP)
           (Swiss-Prot:Q92973) [Homo sapiens]
          Length = 547

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 59  CHFAMTKNSNSQGSNTSAAN--AIALGAMAV 145
           CH  +TK++N  G N SAAN    A+G +AV
Sbjct: 336 CH--LTKSANFSGENLSAANNACKAIGELAV 364


>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 638

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 89  SQGSNTSAANAIALGAMAVVAVGTFLFTWWKER 187
           S+    + A   ++G ++++ +   LF WW++R
Sbjct: 242 SRNHKMAIAVGSSVGTVSLIFIAVGLFLWWRQR 274


>At5g15360.1 68418.m01798 hypothetical protein 
          Length = 253

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 35  RFSLPQINCHFAMTKNSNSQG---SNTSAANAIALGAMAVVAVGTF 163
           RF LPQI C F+ + +        S  ++ +A+ L A AVV   T+
Sbjct: 185 RFGLPQIACAFSNSSHLQDMSHLFSALASNSAVDLSARAVVERTTY 230


>At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 889

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 65  FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPP 199
           F M  N N + + + +A  +  G   +      LFT   E+K+PP
Sbjct: 655 FKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPP 699


>At4g13620.1 68417.m02120 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
           contains Pfam profile PF00847: AP2 domain
          Length = 388

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 238 LLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRH 137
           LL S I+ +SS +  N P  PP K    ++ N H
Sbjct: 306 LLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339


>At1g66880.1 68414.m07601 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 1296

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -2

Query: 175 PSKEKCSDRHN-RHRA*CYSISSGCV--AALRIRILGHRKMAIYLWQRKTTMIVMEHF 11
           P + KC   H+   +  C +I++G       R +I GH  + ++ +    ++I+ +HF
Sbjct: 401 PFEVKCKPHHSPTAKFQCGNITAGFPFSGGNRPQICGHPSLELHCYNNMASIIISDHF 458


>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
           Nrap family protein contains Pfam profile PF03813: Nrap
           protein; similar to nucleolar RNA-associated protein
           alpha (GI:18539461) [Mus musculus]
          Length = 1053

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 150 RSEHFSLLGGKKGRFP 197
           RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741


>At1g30500.2 68414.m03729 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
          Length = 190

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 121 YSTRRDGGCGGRNISLYLVERKEGSPTARSSRRESAKIVAEHSA 252
           ++ RR  GCGGR    +L  +KE      SS  E + + A  SA
Sbjct: 143 HAIRRPRGCGGR----FLNAKKEDEHHEDSSHEEKSNLSAGKSA 182


>At1g30500.1 68414.m03728 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
          Length = 186

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 121 YSTRRDGGCGGRNISLYLVERKEGSPTARSSRRESAKIVAEHSA 252
           ++ RR  GCGGR    +L  +KE      SS  E + + A  SA
Sbjct: 139 HAIRRPRGCGGR----FLNAKKEDEHHEDSSHEEKSNLSAGKSA 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,735
Number of Sequences: 28952
Number of extensions: 142566
Number of successful extensions: 390
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)