Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e06
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    29   3.6  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    29   3.6  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    29   3.6  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    29   3.6  
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc...    27   8.4  
At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containi...    27   8.4  
At1g17950.1 68414.m02221 myb family transcription factor (MYB52)...    27   8.4  

>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 485
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 180 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 228


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 485
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 327 YLQYWFLLSFLMSVALNAPTLWTAFKTTEAHEVVYEMKLFQAMYFSNVLLNYV 485
           YLQ WF++ FL  + L    +W   +++   +V   +   QA+ F  VL+ Y+
Sbjct: 187 YLQRWFIIDFLSVLPLPQIVVWRFLQSSNGSDV---LATKQALLFI-VLVQYI 235


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 405 TTEAHEVVYEMK-LFQAMYFSNVLLNYVVFSDNQMGTNFVFVNNLI 539
           TTE   + +E + L Q  Y    L +YVVFSDN + ++ V VN+ I
Sbjct: 297 TTEYFTLDHEKRQLLQQSYNDPDLYHYVVFSDNVLASS-VVVNSTI 341


>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein similar to SP|P87051
           Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
           (Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
           Pfam profiles PF00160: peptidyl-prolyl cis-trans
           isomerase cyclophilin-type, PF00400: WD domain G-beta
           repeat
          Length = 631

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 513 LYPFDCPKTPHNSTARY*STWLGTASFRKLLHGLL 409
           LYP +CPKT  N T    + +     F +++ G +
Sbjct: 491 LYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFM 525


>At1g79490.1 68414.m09264 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 429 YEMKLFQAMYFSNVLLNYVV 488
           YE++   A YF NVLLNY+V
Sbjct: 656 YELEEGAARYFVNVLLNYLV 675


>At1g17950.1 68414.m02221 myb family transcription factor (MYB52)
           similar to myb-like protein GI:6979341 from [Oryza
           sativa]
          Length = 249

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 MGLFTCCTKYTRLSTDTKVKFPYAALSYIN 263
           +G +  C K  RL+T T + FPY   S+IN
Sbjct: 129 IGNYKDCDKERRLATTTAINFPY-QFSHIN 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,415
Number of Sequences: 28952
Number of extensions: 277920
Number of successful extensions: 556
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)