Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e01
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 2.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 26 3.5
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 4.7
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 6.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 6.2
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 25 8.1
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 397 CFLSFFATLSHCYCAV 350
CFLSFFA L H C++
Sbjct: 40 CFLSFFALLLHLPCSI 55
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 338 SEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNT 493
SE TH++ S + + N +PA +S T S S NN S N T
Sbjct: 108 SEVTHTSEGYADSNDS--RPSSISNSSESPAPINSATASMSPANNTSGNNIT 157
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +2
Query: 398 TVCENLQANPAQTSSGTPSTSVVNNK-SANRNTVQG-PTRSKPIEIQA 535
++ +L N S G+P+TS+ +K S N N + PT S+ + + A
Sbjct: 233 SIMNDLGDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSENVHLSA 280
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 353 STVAVTKSGKKAQKATV-----CENLQANPAQTSSGTPSTSVVNNKSANR 487
ST TK KK QK NL + S G + ++NN++ANR
Sbjct: 447 STSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELINNRAANR 496
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +2
Query: 275 QVTLNAADIKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPS 454
Q TL+ + K K + E+T+ + G + E QA P + + + S
Sbjct: 1229 QTTLDGSISNTKKSSRTKKKKEEETNRGDETSPEGTVGEDEVEEEPRQAEPPKRALRSNS 1288
Query: 455 TSVVNNKSANRNTVQ 499
+NK RN+++
Sbjct: 1289 GKAASNKRTTRNSMK 1303
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +2
Query: 323 AKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSA--NRNTV 496
++P PS T S AV + +V + N GTPSTS+ K++ + +
Sbjct: 204 SQPVPSS-TFSRSAVVPNPSLPLNPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPPSHAM 262
Query: 497 QGPTRSKP 520
Q P S P
Sbjct: 263 QNPHNSFP 270
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 6.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 553 IFIIPICLYLNGFAASWA 500
+ I+ CL++ GFA +WA
Sbjct: 371 VMIVMACLFIFGFAQTWA 388
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 335 PSEQTHSTVAVTKSGKKAQKATVCENLQAN--PAQTSSGTPSTSVVNNKSANRNTVQGPT 508
PS Q ST + + K + + L P + + SV+N KS N+ V+GP
Sbjct: 565 PSVQNVSTKQKSTNDTDNSKLKINKPLTGGYAPLPSRPNRMNHSVLNEKS-NKEFVRGPR 623
Query: 509 RSKPIEIQA 535
PIE+ +
Sbjct: 624 VLPPIEVSS 632
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 422 NPAQTSSGTPSTSVVNNKSANRNTVQGPTRSK 517
NP QTS G PSTS +S+ +T P S+
Sbjct: 167 NPTQTSPGKPSTS----ESSQTDTSTRPANSQ 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,140
Number of Sequences: 5004
Number of extensions: 38228
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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