Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e01
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371 30 1.6
10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839 29 3.6
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 29 3.6
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 28 4.8
04_04_0378 - 24822436-24822521,24822623-24822738,24823010-248230... 28 4.8
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 28 4.8
09_04_0125 - 14866215-14866339,14866878-14866953,14867486-148675... 28 6.3
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 8.3
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 27 8.3
01_06_1588 + 38474698-38477169 27 8.3
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 8.3
>03_01_0274 - 2114076-2115506,2117897-2118114,2118251-2118371
Length = 589
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -2
Query: 318 IIFKSFISAAL--SVTCNLGYGNPFRNALVSVNVFPSASRMVP**QPKGSP 172
I+F S + L +V+ ++GYG P LVS+++F + + + P+GSP
Sbjct: 200 ILFSSTVLVYLQDNVSWSVGYGIPTLGLLVSISIFLAGTPLYRHKVPQGSP 250
>10_08_0334 + 16859581-16859701,16859729-16860003,16862355-16863839
Length = 626
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 318 IIFKSFISAAL--SVTCNLGYGNPFRNALVSVNVFPSASRMVP**QPKGSPQFT 163
I+F + + L +V+ +GYG P +VSV VF S + + P+GSP T
Sbjct: 222 ILFSTTVLVYLQDNVSWTVGYGIPTLGLMVSVAVFLSGTPLYRHKVPQGSPLAT 275
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 332 EPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANR--NTVQGP 505
+P +++H V + KKA N+Q P S S S N S R ++++
Sbjct: 178 DPVDRSHPDVHDSSIAKKAASEESHPNIQDKPVVNESSKESQSRSTNDSTTRGVDSMKHA 237
Query: 506 TRSKPIE 526
++ +P+E
Sbjct: 238 SKEEPVE 244
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 368 TKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNTVQGP 505
TK K++ AT ++LQA T G ST + N+KS+N T P
Sbjct: 222 TKKMKRSASATTRKSLQA--TNTDEGNAST-LTNSKSSNGRTTTVP 264
>04_04_0378 -
24822436-24822521,24822623-24822738,24823010-24823092,
24823772-24823918,24824004-24824051,24824153-24824353,
24824981-24825152,24825235-24825299,24825813-24825939,
24826436-24826528,24826608-24826696,24826804-24826950,
24827047-24827359,24827474-24828048
Length = 753
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 425 PAQTSSGTPSTSVVNNKSANRNTVQGPTRSKPIE 526
P +++G P +++ +S N+N QG + P E
Sbjct: 106 PTSSTAGQPKVGILDERSENQNQNQGKKEASPEE 139
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 586 AAVA-VATGMVIIFIIPICLYLNGFAASW 503
A VA ++ G I+ ++ ICL+++ FA SW
Sbjct: 375 AGVANISQGYAIVVVLFICLFVSAFAWSW 403
>09_04_0125 -
14866215-14866339,14866878-14866953,14867486-14867599,
14869849-14870010,14870358-14870486,14870618-14870704,
14871419-14871454
Length = 242
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 387 LRKQQFVRIYRPTLRRLVQELHQLVLLTINLLIAIQYKAQLAANPLRYRQIGIIK 551
LRKQ F +Y + LV + + T N +A + +AQL + YR++ +K
Sbjct: 9 LRKQWFQVVYANVVITLVHPIAAIGKYTFNGFLARRLEAQLDDQMIAYRKLVSMK 63
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 586 AAVA-VATGMVIIFIIPICLYLNGFAASW 503
A VA ++ G I+ ++ IC++++ FA SW
Sbjct: 251 AGVANISRGYAIVVVLCICVFVSAFAWSW 279
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +2
Query: 314 IIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNT 493
+IE +PE + T ++ +K QK + E+ + G P + +N S + T
Sbjct: 484 VIEQEPERDARETGTSMKLRNRRKLQKDGIPEHTADDIMDEDFGEPPSDEQDNDSGDEYT 543
Query: 494 VQGPTRSK 517
+G + +
Sbjct: 544 ARGKQKGR 551
>01_06_1588 + 38474698-38477169
Length = 823
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 29 LHLTAH*ILSFESRYIFISTFL*KSKSYIFFKTKKMSNWIGYAVSVN 169
LH T+H L F+ RY+ + S I++ S+W +S N
Sbjct: 173 LHPTSHYALRFDDRYLLSLAYDGPDISNIYWPDPDASSWANGRISYN 219
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 586 AAVA-VATGMVIIFIIPICLYLNGFAASW 503
A VA ++ G I+ ++ IC++++ FA SW
Sbjct: 377 AGVANISRGYAIVVVLCICVFVSAFAWSW 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,690
Number of Sequences: 37544
Number of extensions: 222335
Number of successful extensions: 666
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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