Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc8e01
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2) 31 0.91
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1) 30 1.6
SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.1
SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39) 29 2.1
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1) 29 3.7
SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19) 29 3.7
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 29 3.7
SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55) 28 4.9
SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028) 28 4.9
SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053) 28 4.9
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_6770| Best HMM Match : Dehydrin (HMM E-Value=4.9) 28 4.9
SB_39670| Best HMM Match : DUF753 (HMM E-Value=3.4) 28 6.4
SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_15580| Best HMM Match : Pentapeptide (HMM E-Value=0.2)
Length = 610
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +2
Query: 350 HSTVAVTKSGKKAQKATV----CENLQANPAQTSSGTPSTSVVNNKSANRNTVQGPT 508
H+T T + A AT N+ AN A ++ T + + NN +AN T T
Sbjct: 20 HATAHATANNANANNATANNATANNVTANNATANNATANNATANNATANNATANNAT 76
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 425 PAQTSSGTPSTSVVNNKSANRNTVQGPTRSKPIE 526
P Q+SS P T N K++ + T P++SKP E
Sbjct: 1048 PPQSSSAQPGTPPQNAKNSTKATSTEPSQSKPEE 1081
>SB_27421| Best HMM Match : Peptidase_M35 (HMM E-Value=7.1)
Length = 556
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Frame = +2
Query: 182 LGCYQGTILEADGNTLTLTKAFRNGFPYPKLQVTL--NAA-DIKDL---KIIEAKPEPSE 343
LG GT+ ++ G T K F NG+ +T NAA IK L K KP P
Sbjct: 384 LGAIAGTVNQSMGLVSTTRKEFANGYGVMVFDLTPVGNAASSIKALSTSKSTSHKPRPRR 443
Query: 344 QTHSTVA 364
HS VA
Sbjct: 444 TPHSLVA 450
>SB_16622| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1239
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 305 DLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPS 454
D K +E P P H +VA+ + + QKA E+ + A S+G PS
Sbjct: 330 DQKDLENSPSPG--LHGSVALQNAQNQPQKALPVESAPESLASLSTGNPS 377
>SB_20579| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.39)
Length = 721
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 299 IKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKS 478
+K IEA P PS+ T S+ +K+ ++ + +T EN +P G + K
Sbjct: 655 VKKADSIEAPPSPSQSTLSSAEPSKAAEQEETSTREEN-SVDPQPEPQGDQTPGKDKEKP 713
Query: 479 ANR 487
A R
Sbjct: 714 AKR 716
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 140 NWIGYAVSVNCGEPLGCYQGTILE--ADGNTLTLTKAFRNGFPYPKLQVTLNAADI 301
NW + EP GC + T+ + +DG L+ TK +G P P Q ++A I
Sbjct: 721 NWRIRIKNTTLNEPDGCMEFTLCQPFSDGGQLSATKHQFDGPPNPLSQTVIDADTI 776
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +2
Query: 275 QVTLNAADIKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPS 454
Q L + + D + + EPS+ + ++ + A++C+ PA+ ++G+ S
Sbjct: 530 QSPLQQSQLSDKSLADLLQEPSKLSGQNISQAGPQEAPSAASICDVPTTRPAEANTGSKS 589
Query: 455 TSVVNNKSANRNTVQ 499
+ K A N Q
Sbjct: 590 LVIRFLKKAAGNLQQ 604
>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
Length = 798
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 383 KAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNT 493
K + A + E+ + ++SSGT S S+V N RNT
Sbjct: 483 KMENANLTESSGTHTKKSSSGTTSASIVANVIKERNT 519
>SB_39014| Best HMM Match : TPR_2 (HMM E-Value=0.19)
Length = 1036
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/82 (23%), Positives = 37/82 (45%)
Frame = +2
Query: 257 FPYPKLQVTLNAADIKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQT 436
FP+P V+ ++ D D++ + PSE+ + VTK+ K T C + +T
Sbjct: 624 FPFP---VSDDSEDSDDIEDDDFSDLPSEENNLDEPVTKTRASTSKGTCCSDDLIFVEKT 680
Query: 437 SSGTPSTSVVNNKSANRNTVQG 502
++ TS + ++ + G
Sbjct: 681 ATSNSFTSSTSKETTHMGLPHG 702
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +2
Query: 275 QVTLNAADIKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPS 454
+V L D K +I+ EP E + T S K+++ A + + ++SSGTPS
Sbjct: 238 EVELQHNDTKRTGVIQRVIEPGEMVNGTADPFDSPKQSKTAD-----KKSENESSSGTPS 292
Query: 455 TSVVNNKSANRNTVQGPTRSKP 520
S + + + +R P
Sbjct: 293 KSCKESTPSKKRKDSQESRKSP 314
>SB_57266| Best HMM Match : POPLD (HMM E-Value=0.55)
Length = 558
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = +2
Query: 335 PSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNTVQGPTRS 514
PS+ +T +V K QKAT L AN T T N N ++G T
Sbjct: 469 PSDLVINTQSVVGYNNKLQKATDTMTLGANAINTE--TKPVGAHNMAGCNTRLIRGSTAC 526
Query: 515 KP 520
+P
Sbjct: 527 RP 528
>SB_51133| Best HMM Match : Pox_A32 (HMM E-Value=0.028)
Length = 1736
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +2
Query: 320 EAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSS---GTPSTSVVNNKSANRN 490
+A+ PS+ +T +V K QKAT L AN T + G + + +N K A
Sbjct: 311 DARLMPSDLVINTQSVVGYNNKLQKATDSMTLGANAINTETKPVGAHNMAALNTKFAMLP 370
Query: 491 TVQGPTRSKP 520
T P RS P
Sbjct: 371 T--SPGRSSP 378
>SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)
Length = 377
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 263 YPKLQVTLNAADIKDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCE-NLQANPAQTS 439
YP T + D ++++ ++P P + + ++ A T SGK+A ++ + + +L+ + Q S
Sbjct: 289 YPPSSATFASPDTDNVRL--SRPSPQQPSSASQAETSSGKEALESAIEDRSLRRSIVQYS 346
Query: 440 S-GTPSTSVVNNKSANRNTVQGP 505
+ S + +K R + P
Sbjct: 347 TFDWSSVQLSEDKRLGREPAEQP 369
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 329 PEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANR-NTVQGP 505
P+P+ T ++GKK +KAT + + A A+ S ++V A+ + QGP
Sbjct: 1122 PDPAPNPKQT---EETGKKRKKATKVKTVDAGEAEPESDEDVEAIVKRLRADESDDEQGP 1178
Query: 506 TRSKPIE 526
S+ E
Sbjct: 1179 HESEESE 1185
>SB_6770| Best HMM Match : Dehydrin (HMM E-Value=4.9)
Length = 362
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 182 LGCYQGTI-LEADGNTLTLTKAFRNGFPYPKLQVTLNAADIKDLKIIEAKPEPSEQTHST 358
LGC G LE D + + R K ++ + AD++ +++++ EP++ S
Sbjct: 265 LGCLPGEYHLEVDTDVQPVKHTPRRVAIPLKAELKAHIADLEKMEVLKKVTEPTDWISSQ 324
Query: 359 VAVTKSGK 382
V V K K
Sbjct: 325 VVVRKGSK 332
>SB_39670| Best HMM Match : DUF753 (HMM E-Value=3.4)
Length = 332
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 152 YAVSVNCGEPLGCYQGTILEADGNTLTLTKAFRNGFPYPKLQVTLNAADI 301
Y + + C E G +A NT T T A NG+ Y V N AD+
Sbjct: 196 YCLYLQCQEVAGLGSYEYDDAIQNTTTATDAIANGY-YNPTDVKFNVADL 244
>SB_54427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +2
Query: 182 LGCYQGTI-LEADGNTLTLTKAFRNGFPYPKLQVTLNAADIKDLKIIEAKPEPSEQTHST 358
LGC G LE D + + R K ++ + AD++ +++++ EP++ S
Sbjct: 34 LGCLPGEYHLEVDKDVQPVKHTPRRVAIPLKAELKAHIADLEKVEVLKKVTEPTDWISSQ 93
Query: 359 VAVTKSGK 382
V V K K
Sbjct: 94 VVVRKGSK 101
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 317 IEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGT--PSTSVVNNKS 478
+ ++ P +T + T+S KAT NL + ++SSG TS N+KS
Sbjct: 191 LSSESSPKHSPSATPSTTRSKASLGKATSTTNLDSASRRSSSGNLLRPTSASNSKS 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,461
Number of Sequences: 59808
Number of extensions: 281645
Number of successful extensions: 1128
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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