Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e01
         (586 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021271-1|AAH21271.1|  508|Homo sapiens EDC3 protein protein.         64   3e-10
BC011534-1|AAH11534.1|  508|Homo sapiens enhancer of mRNA decapp...    64   3e-10
AK024781-1|BAB15001.1|  508|Homo sapiens protein ( Homo sapiens ...    64   3e-10
AF193058-1|AAG22486.1|  508|Homo sapiens unknown protein.              64   3e-10

>BC021271-1|AAH21271.1|  508|Homo sapiens EDC3 protein protein.
          Length = 508

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 137 SNWIGYAVSVNCGEPLGCYQGTILEAD--GNTLTLTKAFRNGFPYPKLQVTLNAADIKDL 310
           ++W+G  VS+NCG+ LG YQG +   D    T++LT+ F NG      +VT  A DI +L
Sbjct: 3   TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL 62

Query: 311 KIIEAKPEPSEQTH 352
           KI+E  P P +  H
Sbjct: 63  KILEI-PGPGDNQH 75


>BC011534-1|AAH11534.1|  508|Homo sapiens enhancer of mRNA decapping
           3 homolog (S. cerevisiae) protein.
          Length = 508

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 137 SNWIGYAVSVNCGEPLGCYQGTILEAD--GNTLTLTKAFRNGFPYPKLQVTLNAADIKDL 310
           ++W+G  VS+NCG+ LG YQG +   D    T++LT+ F NG      +VT  A DI +L
Sbjct: 3   TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL 62

Query: 311 KIIEAKPEPSEQTH 352
           KI+E  P P +  H
Sbjct: 63  KILEI-PGPGDNQH 75


>AK024781-1|BAB15001.1|  508|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21128 fis, clone CAS06258. ).
          Length = 508

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 137 SNWIGYAVSVNCGEPLGCYQGTILEAD--GNTLTLTKAFRNGFPYPKLQVTLNAADIKDL 310
           ++W+G  VS+NCG+ LG YQG +   D    T++LT+ F NG      +VT  A DI +L
Sbjct: 3   TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL 62

Query: 311 KIIEAKPEPSEQTH 352
           KI+E  P P +  H
Sbjct: 63  KILEI-PGPGDNRH 75


>AF193058-1|AAG22486.1|  508|Homo sapiens unknown protein.
          Length = 508

 Score = 64.1 bits (149), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +2

Query: 137 SNWIGYAVSVNCGEPLGCYQGTILEAD--GNTLTLTKAFRNGFPYPKLQVTLNAADIKDL 310
           ++W+G  VS+NCG+ LG YQG +   D    T++LT+ F NG      +VT  A DI +L
Sbjct: 3   TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL 62

Query: 311 KIIEAKPEPSEQTH 352
           KI+E  P P +  H
Sbjct: 63  KILEI-PGPGDNQH 75


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,418,990
Number of Sequences: 237096
Number of extensions: 1213846
Number of successful extensions: 3255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3251
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)