Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc8e01
         (586 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10440.1 68416.m01252 hypothetical protein                          31   0.43 
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    31   0.43 
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    31   0.43 
At2g01750.1 68415.m00104 expressed protein                             31   0.75 
At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual...    29   2.3  
At1g06760.1 68414.m00718 histone H1, putative similar to histone...    29   3.0  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    28   5.3  
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi...    28   5.3  
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil...    27   7.0  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    27   7.0  
At4g15840.1 68417.m02409 expressed protein                             27   9.2  
At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /...    27   9.2  
At1g76850.1 68414.m08943 expressed protein                             27   9.2  

>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +2

Query: 302 KDLKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSA 481
           +  ++   +PEPSE  H ++  TK  + A ++ +    +    Q  +G P    +  K A
Sbjct: 315 RSARLKSQEPEPSESFHDSIETTKRRRSAIRSAMFNIQELGVIQNLNGLPDDQEIAAK-A 373

Query: 482 NRNTVQGPTRSKPIEIQ 532
             +  +  T SKP  ++
Sbjct: 374 RCSAREQSTGSKPEAVE 390


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 329 PEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNTVQGP- 505
           P P  +    V  +  G  A   +V   L  NP  +SSG+ S S V+    N N V+ P 
Sbjct: 65  PLPVSRIAGGVTSSSGGSPASSESVVSVLHNNPE-SSSGSASVSPVSGHRQNGNQVRRPV 123

Query: 506 TRSKPIE 526
            + KP++
Sbjct: 124 VKFKPVD 130


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 329 PEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNTVQGP- 505
           P P  +    V  +  G  A   +V   L  NP  +SSG+ S S V+    N N V+ P 
Sbjct: 65  PLPVSRIAGGVTSSSGGSPASSESVVSVLHNNPE-SSSGSASVSPVSGHRQNGNQVRRPV 123

Query: 506 TRSKPIE 526
            + KP++
Sbjct: 124 VKFKPVD 130


>At2g01750.1 68415.m00104 expressed protein 
          Length = 629

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 149 GYAVSVNCGEPLGCYQGTILEADGNTLTLTKAFRNG 256
           GYA  VN G P     GT       +LT++ +FR G
Sbjct: 5   GYAFEVNNGRPTASEFGTTARISSPSLTMSSSFREG 40


>At1g03930.1 68414.m00378 protein kinase (ADK1) identical to dual
           specificity kinase 1 (ADK1) [Arabidopsis thaliana]
           gi|1216484|gb|AAB47968; supported by cDNA gi:18700076
           and gi:1216483.  Note: differences between cDNAs in the
           11th exon, possibly due to errors or alternative
           splicing.
          Length = 471

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 449 PSTSVVNNKSANRNTVQGPTRSKP 520
           P+TS   ++SA+RN+V GP    P
Sbjct: 352 PATSTTRDRSASRNSVDGPLSKHP 375


>At1g06760.1 68414.m00718 histone H1, putative similar to histone
           H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
           identical to cDNA H1-1C mRNA for histone H1-1 (partial)
           GI:732560
          Length = 274

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 311 KIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRN 490
           K    K  P+++  +TVAVTK+ +K   A+  +   A   +T++    T+    K   R 
Sbjct: 139 KAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVPRA 198

Query: 491 TVQGPTRSKPIE 526
           T    T+ K ++
Sbjct: 199 TA-AATKRKAVD 209


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/66 (19%), Positives = 32/66 (48%)
 Frame = +2

Query: 335 PSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSANRNTVQGPTRS 514
           PS+    + + ++S  ++Q  +  ++   + +Q+ S +PS +   + S  +   Q P+  
Sbjct: 773 PSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQSPSSQ 832

Query: 515 KPIEIQ 532
            P + Q
Sbjct: 833 SPSQTQ 838


>At1g24440.1 68414.m03079 expressed protein similar to MTD2
           [Medicago truncatula] GI:9294812
          Length = 251

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 308 LKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENL 415
           LKI+EA  E +    + + + KSG + Q   VC NL
Sbjct: 14  LKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNL 49


>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
           protein contains Pfam domain, PF00096: Zinc finger, C2H2
           type; contains Pfam domain, PF01428: AN1-like Zinc
           finger
          Length = 279

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 236 LVLTCFHLLQGWCLDSSLKVRHSSPK 159
           L  TC   LQ +CLD    ++HS PK
Sbjct: 24  LPFTCDRCLQVFCLDHRSYMKHSCPK 49


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 152 YAVSVNCGEPLGC 190
           Y+ S NCG+PLGC
Sbjct: 442 YSCSFNCGKPLGC 454


>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 416 QANPAQTSSGTPSTSVVNNKSANRNTVQGPT 508
           Q++ +QT+ G P TSVV+    +   ++GP+
Sbjct: 124 QSSNSQTNFGRPCTSVVDKTEGSVVAIEGPS 154


>At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           polyphosphoinositide binding protein Ssh1p (GI:2739044)
           {Glycine max}; similar to polyphosphoinositide binding
           protein Ssh2, Glycine max, gb:T05953; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus
          Length = 668

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 308 LKIIEAKPEPSEQTHSTVAVTKSGKKAQKATVCENLQANPAQTSSGTPSTSVVNNKSAN 484
           L+++    E SEQTH    VT   K+  K+    ++  +  QT   TP T  V ++  N
Sbjct: 101 LEVLNHTAEDSEQTHE---VTPE-KETVKSEFLNHVAEDSEQTHEVTPETETVKSEVLN 155


>At1g76850.1 68414.m08943 expressed protein
          Length = 1090

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 151 SNPIRHFLCFKKYI*FRFLQKCTYKYVSRFE 59
           S+P+ H+L  + +     L+KCTY + +R E
Sbjct: 433 SDPVWHYLNVQNHRIHGLLEKCTYDHEARVE 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,748
Number of Sequences: 28952
Number of extensions: 190357
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)